YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03371
Organism:	Caenorhabditis elegans
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03371.

Description	E-value	Query Range	Subject Range
gi\|76621793 - gi\|76621793\|ref\|XP_595705.2\| PREDICTED: similar to endothelial differentiation, sphingolipid G-prote...	55.0	[0..3]	[63..14]
gi\|157755429 - gi\|157755429\|ref\|XP_001670058.1\| Hypothetical protein CBG21705 [Caenorhabditis briggsae AF16] TMA7_CAEBR - Translation machinery-associated protein 7 homolog OS=Caenorhabditis briggsae GN=CBG21705 PE=3 SV=1	46.0	[0..1]	[54..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRQGGKAK PLKAAKKTEK DLSEEDVEFK KKQQEEAKKI KEMAAKAGQR GPLLGGGIKK  60
   61 SGKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.031517
Match:	PF09072.1
Description:	No description for PF09072.1 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits