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View Structure Prediction Details

Protein: lips-1
Organism: Caenorhabditis elegans
Length: 333 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-1.

Description E-value Query
Range
Subject
Range
gi|187039260, gi... - gi|39588007|emb|CAE57238.1| Hypothetical protein CBG00116 [Caenorhabditis briggsae], gi|187039260|em...
gi|157770906 - gi|157770906|ref|XP_001677273.1| Hypothetical protein CBG00116 [Caenorhabditis briggsae AF16]
217.0 [0..1] [333..1]

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Predicted Domain #1
Region A:
Residues: [1-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNNILILAA LSCTAAMADI FGPLSDHFIS HLNKRPKRND ALLRQISAFG ETGSFGGKVF  60
   61 SEEKLGNTPI VFIHGNSDSA LKFGDGPFQS GWDEILKYFM SKDYTLAELY GITYGDRNIS 120
  121 NSYIRHFNCQ NVQLHRRFLE FVLHYTKAKQ INIVAHSMGV SIARKAIQGG EFVTKTESCD 180
  181 IGPNLSHRIG TFIALASANY GMCPCQHAFA FPACGMETGF FPGTCPEMTC SSQDVNISET 240
  241 CGEVPYSNYL MNLNNSGKKD ASFVASLWSD DDEILGKGNM VWGRQTSLVP HSDMRKIYSD 300
  301 LKHNDVKLLT AEDQYNIIHM NDQKFSLHET TEY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.154902
Match: 2d0dA
Description: No description for 2d0dA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle