YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03314
Organism:	Caenorhabditis elegans
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03314.

Description	E-value	Query Range	Subject Range
gi\|157770952 - gi\|157770952\|ref\|XP_001677296.1\| Hypothetical protein CBG00143 [Caenorhabditis briggsae AF16] gi\|39588030, gi\|... - gi\|39588030\|emb\|CAE57261.1\| Hypothetical protein CBG00143 [Caenorhabditis briggsae], gi\|187039283\|em...	225.0	[0..3]	[242..7]
CE03235 - 3-oxo-5-alpha-steroid 4-dehydrogenase status:Partially_confirmed UniProt:Q19605 protein_id:CAA92168....	221.0	[0..1]	[243..1]
TECR_DICDI - Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1 gi\|60474548, gi\|... - gi\|66826619\|ref\|XP_646664.1\| synaptic glycoprotein SC2-like protein [Dictyostelium discoideum AX4], ...	218.0	[0..27]	[242..73]
gi\|62740082 - gi\|62740082\|gb\|AAH94046.1\| Gpsn2 protein [Mus musculus]	218.0	[0..32]	[242..129]
gi\|60551245 - gi\|60551245\|gb\|AAH91002.1\| Gpsn2 protein [Xenopus tropicalis]	218.0	[0..32]	[242..113]
gi\|256994, gi\|21... - gi\|256994\|gb\|AAB23534.1\| SC2 [Rattus sp.], gi\|2144098\|pir\|\|I56573 synaptic glycoprotein SC2 [importe... TECR_RAT - Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus GN=Tecr PE=1 SV=1	214.0	[0..32]	[242..75]
gi\|109123711 - gi\|109123711\|ref\|XP_001112313.1\| PREDICTED: glycoprotein, synaptic 2 [Macaca mulatta]	214.0	[0..32]	[242..90]
gi\|30177740, gi\|... - gi\|31204955\|ref\|XP_311426.1\| AGAP010714-PA [Anopheles gambiae str. PEST], gi\|30177740\|gb\|EAA07072.2\|... AGAP010714-PA - very-long-chain enoyl-CoA reductase\|protein_coding\|3L:8919149:8922035:1\|gene:AGAP010714	213.0	[0..27]	[242..64]
gi\|73986266 - gi\|73986266\|ref\|XP_852850.1\| PREDICTED: similar to Synaptic glycoprotein SC2 isoform 2 [Canis famili...	213.0	[0..32]	[242..75]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRETILMMAW AMIGTAFFVF FALKMGLTAG YGRYTNQAQW GINPKLAWFI QESPAFFIPF  60
   61 YFLFGGLSST GRILNCIFLV HYFYR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALIYPFRIRS TTKSPLLIVA AAVAFCTYNG TLQGVWNSYY QLEEELTYRH LIGSILYFSG  60
   61 MFINHKSDNI LMTLRKPGET GYKIPTGFLY EYISCPNYFG EIMEWIGYAI LGWNLPALAF 120
  121 AIFTFANIGP RAIAHHNWYK EKFPKYPPTR RALIPYIY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	97.853872
Match:	PF02544.7
Description:	No description for PF02544.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits