YRC Public Data Repository - Protein Structure Prediction

Protein:	tni-1
Organism:	Caenorhabditis elegans
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tni-1.

Description	E-value	Query Range	Subject Range
gi\|50761252 - gi\|50761252\|ref\|XP_419242.1\| PREDICTED: similar to troponin I slow skeletal muscle isoform [Gallus g...	210.0	[0..47]	[234..252]
gi\|74354115 - gi\|74354115\|gb\|AAI02732.1\| LOC511094 protein [Bos taurus]	179.0	[0..18]	[219..58]
TNNI3_RAT - Troponin I, cardiac muscle OS=Rattus norvegicus GN=Tnni3 PE=1 SV=2	173.0	[0..10]	[229..1]
gi\|52430500, gi\|... - gi\|52430500\|gb\|AAH82923.1\| LOC494826 protein [Xenopus laevis], gi\|147907417\|ref\|NP_001088122.1\| hypo...	173.0	[0..29]	[232..46]
gi\|62132589 - gi\|62132589\|gb\|AAX69047.1\| cardiac troponin I [Bufo marinus]	169.0	[0..29]	[235..49]
TNNI3_MOUSE - Troponin I, cardiac muscle OS=Mus musculus GN=Tnni3 PE=1 SV=2	168.0	[0..10]	[229..1]
gi\|185132455, gi... - gi\|209734142\|gb\|ACI67940.1\| Troponin I, fast skeletal muscle [Salmo salar], gi\|2062497\|gb\|AAB53385.1...	168.0	[0..49]	[229..4]

Back

Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQIDENIRY GGAANETDGE DAQRKAQERE AKKAEVRKRL EEAGQKKQKK GFLTPERKKK  60
   61 LRKLLMNKAA EDLKTQQLRK EQERVKVLAE RTVALPNVDS IDDHAKLEAI YNDLFSRLCN 120
  121 LEEEKYDINH ITTETETTIN QLNIEVNDLR GKFVKPSLKK VSKYDNKFKK MAEAKKEDGS 180
  181 KNLRNNLKTV KKESVFTQIA NKKKSDKPEW SKKKEEKKEE SAPEPVIEPV EEEETAASEG 240
  241 EEEEEEADEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1j1eC
Description:	Troponin I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits