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View Structure Prediction Details

Protein: hsp-12.3
Organism: Caenorhabditis elegans
Length: 109 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp-12.3.

Description E-value Query
Range
Subject
Range
gi|50344347 - gi|50344347|emb|CAF02101.1| alphaA-crystallin [Elephas maximus]
112.0 [0..4] [109..31]
gi|50344351 - gi|50344351|emb|CAF02103.1| alphaA-crystallin [Lygodactylus picturatus]
112.0 [0..4] [109..31]
gi|229516, gi|71455 - pir||CYMQAA alpha-crystallin chain A - rhesus macaque (tentative sequence), gi|229516|prf||751000B ...
111.0 [0..4] [109..42]
CRYAA - crystallin, alpha A
gi|114684552 - gi|114684552|ref|XP_514927.2| PREDICTED: crystallin, alpha A [Pan troglodytes]
111.0 [0..4] [109..42]
CRYAA_PEDCA - Alpha-crystallin A chain OS=Pedetes capensis GN=CRYAA PE=1 SV=1
CRYAA_CAVPO - Alpha-crystallin A chain OS=Cavia porcellus GN=CRYAA PE=1 SV=1
111.0 [0..4] [109..42]
CRYAA_RABIT - Alpha-crystallin A chain OS=Oryctolagus cuniculus GN=CRYAA PE=1 SV=3
111.0 [0..4] [109..42]
CRYAA_ARTJA - Alpha-crystallin A chain OS=Artibeus jamaicensis GN=CRYAA PE=1 SV=1
111.0 [0..4] [109..42]
CRYAA_DIDVI - Alpha-crystallin A chain OS=Didelphis virginiana GN=CRYAA PE=1 SV=1
111.0 [0..4] [107..42]
CRYAA_LOXAF - Alpha-crystallin A chain OS=Loxodonta africana GN=CRYAA PE=1 SV=1
111.0 [0..4] [109..42]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVAIDHDQT AKWDWPFQKG DGVVKVLDYE DHFEVGLEAH NFLPNEIDVK NIGEFLEIHM  60
   61 AHTTKDDKFG SITRSITRCY RLPKGTDPAT IKSKLDGSGI LHISGNKKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.30103
Match: 1gmeA
Description: Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.899294246597615 bayes_pls_golite062009
protein binding 0.766194779819271 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle