YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl-26
Organism:	Caenorhabditis elegans
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl-26.

Description	E-value	Query Range	Subject Range
gi\|50754890 - gi\|50754890\|ref\|XP_414531.1\| PREDICTED: similar to ribosomal protein L26; 60S ribosomal protein L26 ...	194.0	[0..1]	[142..133]
gi\|47216819 - gi\|47216819\|emb\|CAG10141.1\| unnamed protein product [Tetraodon nigroviridis]	171.0	[0..1]	[115..1]
gi\|220948100 - gi\|220948100\|gb\|ACL86593.1\| RpL26-PA [synthetic construct] gi\|195496428, gi... - gi\|195496428\|ref\|XP_002095689.1\| GE19574 [Drosophila yakuba], gi\|195496407\|ref\|XP_002095681.1\| GE195... gi\|194197430, gi... - gi\|195591385\|ref\|XP_002085421.1\| GD14780 [Drosophila simulans], gi\|194197430\|gb\|EDX11006.1\| GD14780 ... gi\|194751754, gi... - gi\|194751754\|ref\|XP_001958190.1\| GF23649 [Drosophila ananassae], gi\|190625472\|gb\|EDV40996.1\| GF23649... gi\|194124515, gi... - gi\|195352261\|ref\|XP_002042631.1\| GM15002 [Drosophila sechellia], gi\|194124515\|gb\|EDW46558.1\| GM15002... RpL26-PA, FBpp03... - The gene Ribosomal protein L26 is referred to in FlyBase by the symbol Dmel\RpL26 (CG6846, FBgn00368...	169.0	[0..1]	[140..1]
gi\|54641657\|gb\|E... - GA19902-PA [Drosophila pseudoobscura], GA19902 [Drosophila pseudoobscura pseudoobscura] gi\|125977746, gi... - gi\|54641657\|gb\|EAL30407.1\| GA19902 [Drosophila pseudoobscura pseudoobscura], gi\|125977746\|ref\|XP_001...	165.0	[0..1]	[140..1]
gi\|70909791 - gi\|70909791\|emb\|CAJ17321.1\| ribosomal protein L26e [Cicindela litorea]	163.0	[0..1]	[140..1]
gi\|109507735, gi... - gi\|109508395\|ref\|XP_001060312.1\| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced gen...	163.0	[0..1]	[141..15]
gi\|112984230, gi... - gi\|54609243\|gb\|AAV34837.1\| ribosomal protein L26 [Bombyx mori], gi\|112984230\|ref\|NP_001037233.1\| rib...	163.0	[0..1]	[140..1]
gi\|74220324 - gi\|74220324\|dbj\|BAE31338.1\| unnamed protein product [Mus musculus]	163.0	[0..1]	[142..1]
gi\|49532902 - gi\|49532902\|dbj\|BAD26686.1\| Ribosomal protein L26 [Plutella xylostella]	162.0	[0..1]	[139..1]
gi\|48145773 - gi\|48145773\|emb\|CAG33109.1\| RPL26 [Homo sapiens]	162.0	[0..1]	[142..1]

Back

Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVNPFVSSD SGKSRKAHFN APSHERRRIM SAPLTKELRT KHGIRAIPIR TDDEVVVMRG  60
   61 RHKGNTGRVL RCYRKKFVIH IDKITREKAN GSTVHIGIHP SKVAITKLKL DKDRRALVER 120
  121 KAAGRSRVTG ILKGKHTDET VN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.30103
Match:	1s1iU
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits