YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03235
Organism:	Caenorhabditis elegans
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03235.

Description	E-value	Query Range	Subject Range
gi\|157770952 - gi\|157770952\|ref\|XP_001677296.1\| Hypothetical protein CBG00143 [Caenorhabditis briggsae AF16] gi\|39588030, gi\|... - gi\|39588030\|emb\|CAE57261.1\| Hypothetical protein CBG00143 [Caenorhabditis briggsae], gi\|187039283\|em...	220.0	[0..3]	[242..7]
CE03314 - 3-oxo-5-alpha-steroid 4-dehydrogenase status:Partially_confirmed UniProt:Q20344 protein_id:CAA92173....	213.0	[0..1]	[243..1]
gi\|62740082 - gi\|62740082\|gb\|AAH94046.1\| Gpsn2 protein [Mus musculus]	203.0	[0..27]	[242..124]
gi\|60551245 - gi\|60551245\|gb\|AAH91002.1\| Gpsn2 protein [Xenopus tropicalis]	202.0	[0..27]	[242..108]
gi\|109123711 - gi\|109123711\|ref\|XP_001112313.1\| PREDICTED: glycoprotein, synaptic 2 [Macaca mulatta]	200.0	[0..21]	[242..79]
gi\|256994, gi\|21... - gi\|256994\|gb\|AAB23534.1\| SC2 [Rattus sp.], gi\|2144098\|pir\|\|I56573 synaptic glycoprotein SC2 [importe... TECR_RAT - Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus GN=Tecr PE=1 SV=1	199.0	[0..27]	[242..70]
gi\|73986266 - gi\|73986266\|ref\|XP_852850.1\| PREDICTED: similar to Synaptic glycoprotein SC2 isoform 2 [Canis famili...	198.0	[0..21]	[242..64]
TECR_BOVIN - Very-long-chain enoyl-CoA reductase OS=Bos taurus GN=TECR PE=2 SV=1	197.0	[0..27]	[242..70]
gi\|13111809 - gi\|13111809\|gb\|AAH00174.2\|AAH00174 Unknown (protein for IMAGE:2901253) [Homo sapiens]	197.0	[0..27]	[242..66]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREILLTMAW AMIGMAVIVF LALTRGFTAG YGRYADRSKY GINPKLAWFI QEAPAFFIPL  60
   61 YYLRRGPSNS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.628	N/A	N/A	a.4.10	N-terminal Zn binding domain of HIV integrase
View	Download	0.363	N/A	N/A	a.140.3	Rho termination factor, N-terminal domain
View	Download	0.273	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.243	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.239	N/A	N/A	a.5.2	UBA-like

Predicted Domain #2

Region A:
Residues: [71-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYELNAAFLF HYFFRALIYP CRIRSTTKSP VAIVAAATFF CAYNGFLQGY WNAFYQPEEP  60
   61 WTTRKLVGSL MYCTGMYINH KSDTILRELR ADGGTGYKIP TGFLYEYISC PNYAGEIMEW 120
  121 IGYSILAWNL PALAFAIFTI ANIGPRAVAH HKWYKETFPG YPPNRRILIP RIF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	95.69897
Match:	PF02544.7
Description:	No description for PF02544.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits