YRC Public Data Repository - Protein Structure Prediction

Protein:	glb-13
Organism:	Caenorhabditis elegans
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-13.

Description	E-value	Query Range	Subject Range
gi\|73988393 - gi\|73988393\|ref\|XP_542374.2\| PREDICTED: similar to Hemoglobin epsilon chain [Canis familiaris]	175.0	[0..42]	[198..40]
gi\|60833497 - gi\|60833497\|gb\|AAX37051.1\| hemoglobin beta [synthetic construct]	172.0	[0..47]	[199..1]
gi\|160333251, gi... - gi\|61867714\|ref\|XP_590745.1\| PREDICTED: similar to epsilon I globin isoform 1 [Bos taurus], gi\|16033... HBE1_CAPHI - Hemoglobin subunit epsilon-1 OS=Capra hircus GN=HBE1 PE=2 SV=2	172.0	[0..47]	[198..1]
HBE_BRATR - Hemoglobin subunit epsilon OS=Bradypus tridactylus GN=HBE1 PE=2 SV=3	171.0	[0..47]	[198..1]
HBB_MACNE - Hemoglobin subunit beta OS=Macaca nemestrina GN=HBB PE=1 SV=2 HBB_MACFU - Hemoglobin subunit beta OS=Macaca fuscata fuscata GN=HBB PE=1 SV=2 gi\|242878309 - gi\|242878309\|gb\|ACS94047.1\| beta hemoglobin [Cercocebus torquatus atys] HBB_MACSP - Hemoglobin subunit beta OS=Macaca speciosa GN=HBB PE=1 SV=2 HBB_MACFA - Hemoglobin subunit beta OS=Macaca fascicularis GN=HBB PE=1 SV=2 gi\|109107606 - gi\|109107606\|ref\|XP_001111709.1\| PREDICTED: similar to beta globin [Macaca mulatta]	171.0	[0..47]	[198..1]
HBB_COLPO - Hemoglobin subunit beta OS=Colobus polykomos GN=HBB PE=2 SV=2	171.0	[0..47]	[198..1]
HBG2_HYLLA - Hemoglobin subunit gamma-2 OS=Hylobates lar GN=HBG2 PE=2 SV=2	171.0	[0..47]	[198..1]
gi\|254770846 - gi\|254770846\|gb\|ACT81668.1\| hemoglobin beta A subunit [Anas acuta] gi\|254770856, gi... - gi\|254770856\|gb\|ACT81673.1\| hemoglobin beta A subunit [Anas bahamensis], gi\|254770854\|gb\|ACT81672.1\|... gi\|254770842 - gi\|254770842\|gb\|ACT81666.1\| hemoglobin beta A subunit [Anas americana] gi\|254770844 - gi\|254770844\|gb\|ACT81667.1\| hemoglobin beta A subunit [Anas penelope] gi\|254770866 - gi\|254770866\|gb\|ACT81678.1\| hemoglobin beta A subunit [Anas zonorhyncha] gi\|222821153, gi... - gi\|222821193\|gb\|ACM67874.1\| hemoglobin beta A subunit [Anas georgica], gi\|222821177\|gb\|ACM67866.1\| h... gi\|254770858 - gi\|254770858\|gb\|ACT81674.1\| hemoglobin beta A subunit [Anas crecca crecca] gi\|254770860 - gi\|254770860\|gb\|ACT81675.1\| hemoglobin beta A subunit [Anas crecca carolinensis] HBB_ANAPL - Hemoglobin subunit beta OS=Anas platyrhynchos GN=HBB PE=1 SV=2 gi\|254770380, gi... - gi\|254770486\|gb\|ACT81488.1\| hemoglobin beta A subunit [Anas flavirostris flavirostris], gi\|254770484... gi\|254770766 - gi\|254770766\|gb\|ACT81628.1\| hemoglobin beta A subunit [Tachyeres patachonicus] gi\|254770780, gi... - gi\|254770782\|gb\|ACT81636.1\| hemoglobin beta A subunit [Amazonetta brasiliensis], gi\|254770780\|gb\|ACT... gi\|254770838, gi... - gi\|254770840\|gb\|ACT81665.1\| hemoglobin beta A subunit [Anas sibilatrix], gi\|254770838\|gb\|ACT81664.1\|... gi\|254770770, gi... - gi\|254770774\|gb\|ACT81632.1\| hemoglobin beta A subunit [Tachyeres brachypterus], gi\|254770772\|gb\|ACT8... gi\|254770776, gi... - gi\|254770778\|gb\|ACT81634.1\| hemoglobin beta A subunit [Speculanas specularis], gi\|254770776\|gb\|ACT81...	171.0	[0..47]	[198..1]
gi\|319899 - pir\|\|HBGO hemoglobin beta chain - gorilla HBB_GORGO - Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2	171.0	[0..47]	[198..1]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCRNVYPIP KRSKSKKINF RCEPNEDEAT SMTNAAAAAG GAKSKCKHFL TRRERILLEQ  60
   61 SWRKTRKTGA DHIGSKIFFM VLTAQPDIKA IFGLEKIPTG RLKYDPRFRQ HALVYTKTLD 120
  121 FVIRNLDYPG KLEVYFENLG KRHVAMQGRG FEPGYWETFA ECMTQAAVEW EANRQRPTLG 180
  181 AWRNLISCII SFMRRGFDEE NGKKKQYSYN VQGFSSNRAR RSISPYAPGV H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1dxtB
Description:	Hemoglobin, beta-chain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits