YRC Public Data Repository - Protein Structure Prediction

Protein:	gst-42
Organism:	Caenorhabditis elegans
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gst-42.

Description	E-value	Query Range	Subject Range
gi\|39588098, gi\|... - gi\|39588098\|emb\|CAE57330.1\| Hypothetical protein CBG00257 [Caenorhabditis briggsae], gi\|187039351\|em... gi\|157771088 - gi\|157771088\|ref\|XP_001677364.1\| Hypothetical protein CBG00257 [Caenorhabditis briggsae AF16]	187.0	[0..1]	[214..1]
gi\|50748528 - gi\|50748528\|ref\|XP_421288.1\| PREDICTED: hypothetical protein isoform 3 [Gallus gallus]	187.0	[0..1]	[211..1]
gi\|71834680, gi\|... - gi\|71834680\|ref\|NP_001025442.1\| glutathione transferase zeta 1 isoform 1 [Danio rerio], gi\|66910381\|...	185.0	[0..1]	[211..1]
GSTZ1_ARATH - Glutathione S-transferase Z1 OS=Arabidopsis thaliana GN=GSTZ1 PE=1 SV=1	185.0	[0..1]	[211..1]
gi\|29420155 - gi\|29420155\|gb\|AAO61856.1\| glutathione S-transferase Z1 [Malva pusilla]	185.0	[0..1]	[211..1]
MAAI_RAT - Maleylacetoacetate isomerase OS=Rattus norvegicus GN=Gstz1 PE=1 SV=2	184.0	[0..1]	[211..1]
gi\|11385465 - gi\|11385465\|gb\|AAG34815.1\|AF243380_1 glutathione S-transferase GST 25 [Glycine max]	183.0	[0..1]	[210..1]
MAAI_MOUSE - Maleylacetoacetate isomerase OS=Mus musculus GN=Gstz1 PE=1 SV=1	182.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQKPVLYS YWRSSCSWRV RIALALKNVD YEYKTVDLLS EEAKSKLKEI NPAAKVPTFV  60
   61 VDGQVITESL AIIEYLEETH PDVPLLPKDP IKRAHARAIS LLVASGIQPL HNLKVLQLLN 120
  121 KKEAGFGGQF AKQFVVEGLT ALEILLKQHS GKYAVGDDVT IADLSIPPLI YSANRFNLDL 180
  181 SPYPTVNRIN ETLADIPAFI AAHPDNQPDT GLNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.30103
Match:	2cz2A
Description:	Crystal structure of glutathione transferase zeta 1-1 (maleylacetoacetate isomerase) from Mus musculus (form-1 crystal)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits