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View Structure Prediction Details

Protein: CE03066
Organism: Caenorhabditis elegans
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03066.

Description E-value Query
Range
Subject
Range
CE18543 - WBGene00007955 status:Partially_confirmed
403.0 [0..1] [255..1]
gi|157768314 - gi|157768314|ref|XP_001675978.1| Hypothetical protein CBG17303 [Caenorhabditis briggsae AF16]
gi|39594751, gi|... - gi|39594751|emb|CAE70619.1| Hypothetical protein CBG17303 [Caenorhabditis briggsae], gi|187025807|em...
378.0 [0..11] [255..1]
HSP6_HETGL - Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1
291.0 [0..14] [237..4]
gi|52783796 - gi|52783796|sp|P62341|SELT_HUMAN Selenoprotein T precursor
283.0 [0..90] [237..36]
SELT_MOUSE - Selenoprotein T precursor - Mus musculus (Mouse)
SELT_RAT - Selenoprotein T precursor - Rattus norvegicus (Rat)
282.0 [0..90] [237..36]
SELT_CHICK - Selenoprotein T precursor - Gallus gallus (Chicken)
282.0 [0..75] [237..25]

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Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIHDELQKQ DMSRFGVFII GVLFFMSVCD VLRTEEHSHD ENHVHEKDDF EAEFGDETDS  60
   61 QSFSQGTEED HIEVREQSSF VKPTAV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [87-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHAKDLPTLR IFYCVSCGYK QAFDQFTTFA KEKYPNMPIE GANFAPVLWK AYVAQALSFV  60
   61 KMAVLVLVLG GINPFERFGL GYPQILQHAH GNKMSSCMLV FMLGNLVEQS LISTGAFEVY 120
  121 LGNEQIWSKI ESGRVPSPQE FMQLIDAQLA VLGKAPVNTE SFGEFQQTV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.96
Match: 2okaA
Description: No description for 2okaA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle