YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03057
Organism:	Caenorhabditis elegans
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03057.

Description	E-value	Query Range	Subject Range
gi\|157774053 - gi\|157774053\|ref\|XP_001665092.1\| hypothetical protein CBG09795 [Caenorhabditis briggsae AF16] gi\|187031286, gi... - gi\|39590591\|emb\|CAE64961.1\| Hypothetical protein CBG09795 [Caenorhabditis briggsae], gi\|187031286\|em...	215.0	[0..1]	[237..1]
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	189.0	[0..39]	[236..1]
gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA... gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA...	186.0	[0..81]	[236..66]
gi\|58377243, gi\|... - gi\|58377243\|ref\|XP_309497.2\| ENSANGP00000022118 [Anopheles gambiae str. PEST], gi\|55244839\|gb\|EAA050...	186.0	[0..54]	[236..84]
gi\|78389205, gi\|... - gi\|78493664\|ref\|ZP_00845896.1\| GrpE protein [Rhodopseudomonas palustris BisB18], gi\|78389205\|gb\|EAP1...	185.0	[0..54]	[236..55]
GRPE_RHIME - Protein GrpE OS=Rhizobium meliloti (strain 1021) GN=grpE PE=3 SV=1 GRPE_RHIME - Protein grpE OS=Rhizobium meliloti GN=grpE PE=3 SV=1	184.0	[0..39]	[236..1]
GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii GN=mge1 PE=3 SV=1 GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	183.0	[0..67]	[236..42]
RPA0331 - RPA0331 possible heat shock protein (HSP-70 COFACTOR), grpE 358745:359371 forward MW:22207	183.0	[0..49]	[236..4]
UNKNOWN - Protein GrpE OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=grpE PE=3 SV=2 GRPE_RHOPA - Protein grpE OS=Rhodopseudomonas palustris GN=grpE PE=3 SV=2	183.0	[0..49]	[236..3]
gi\|83632128, gi\|... - gi\|83644085\|ref\|YP_432520.1\| molecular chaperone GrpE (heat shock protein) [Hahella chejuensis KCTC ...	183.0	[0..41]	[236..94]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRKGVSFVG QAVQQTLKTQ KNLRIQRFSA TASQSSEEVN YEIRKDGKRL RGADYEEIVL  60
   61 TSIAGEDKTQ IPKGAFDVLL KEYDDLQAES LDFKDKYQRS LAETENVRRR GIKQTDDAKV 120
  121 FAIQSFCKDL LEVSDILDIA VKSVKPEDLE SGGKALKDLF EGVSMTRTVM AKTFAKHGLV 180
  181 TVDPTNEKFD PNLHEAVFQI PSANAKQPVG HIEVCTKIGY SLKERPIRPA QVGVVSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.30103
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits