YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE02948
Organism: Caenorhabditis elegans
Length: 260 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02948.

Description E-value Query
Range
Subject
Range
sdz-3 - status:Partially_confirmed UniProt:Q18308 protein_id:AAC46821.2
277.0 [0..22] [258..39]

Back

Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVVNVKVEP TIPDECGSEM PLTIQNAKKA RKRRPAKATD LTPKKTEHPQ LSFPMDQRWA  60
   61 ESTVVTNETH CLCEILTCRN CNKSHKRSRI EHVEV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQCRFSWFKV SMKQPGHAKK MLSETSKLGV QVEDILHALL PSSNPNCWLH FYTFKAKSIE  60
   61 DEEKLKTAVE TNFVRGFNAE SLLGNADKSF FFHDIDMRSA LILCTIATFL KHWKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [211-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESPLPPMDLL RDHEHFSKAL ADAKTFEILD KYVSRNGMKK LKAWDSDTLW 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.667 N/A N/A a.64.2 Bacteriocin AS-48
View Download 0.391 N/A N/A a.4.1 Homeodomain-like
View Download 0.376 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.362 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.346 N/A N/A a.4.5 "Winged helix" DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle