YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02925
Organism:	Caenorhabditis elegans
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02925.

Description	E-value	Query Range	Subject Range
gi\|39597009, gi\|... - gi\|39597009\|emb\|CAE59236.1\| Hypothetical protein CBG02558 [Caenorhabditis briggsae], gi\|187037313\|em... gi\|157751884 - gi\|157751884\|ref\|XP_001679654.1\| Hypothetical protein CBG02558 [Caenorhabditis briggsae AF16]	358.0	[0..3]	[196..5]
CE19110 - WBGene00012628 status:Partially_confirmed TR:Q9XX45 protein_id:CAA20994.1	309.0	[0..1]	[173..55]
gi\|118370338, gi... - gi\|89300137\|gb\|EAR98125.1\| hypothetical protein TTHERM_00341250 [Tetrahymena thermophila SB210], gi\|... gi\|229595325 - gi\|229595325\|ref\|XP_001018370.3\| hypothetical protein TTHERM_00341250 [Tetrahymena thermophila]	76.0	[0..1]	[164..1]
gi\|71754687 - gi\|71754687\|ref\|XP_828258.1\| hypothetical protein [Trypanosoma brucei TREU927] gi\|70833644 - gi\|70833644\|gb\|EAN79146.1\| hypothetical protein, conserved [Trypanosoma brucei]	75.0	[0..3]	[154..5]
gi\|134115369, gi... - gi\|50256273\|gb\|EAL18999.1\| hypothetical protein CNBI0120 [Cryptococcus neoformans var. neoformans B-...	66.0	[0..4]	[174..3]
gi\|70872075 - gi\|70872075\|gb\|EAN86116.1\| hypothetical protein, conserved [Trypanosoma cruzi] gi\|71411435 - gi\|71411435\|ref\|XP_807967.1\| hypothetical protein [Trypanosoma cruzi strain CL Brener]	60.0	[0..7]	[153..6]
gi\|70800015, gi\|... - gi\|73544339\|ref\|XP_848064.1\| hypothetical protein [Leishmania major strain Friedlin], gi\|70800015\|gb...	55.0	[0..1]	[166..1]

Back

Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEEDVLPKW VVLWLFVSGM ICTYDVAYTM NRPYTNDPAS PKANLLFGGW ALYSSVDRHY  60
   61 LTTNDVFTCS TGRVMLLECL LNFIAIGLAF ARSRHGLLLA FTSNVMVLWK TILFFSVFLG 120
  121 QPEGHLPPMN PNKFVWSKFM IFWIPNGVWV LMPTLVLFAL WNKLALPPKM SEKYWKASNK 180
  181 CRGDLSFGDQ KKIALE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits