YRC Public Data Repository - Protein Structure Prediction

Protein:	scpl-2
Organism:	Caenorhabditis elegans
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scpl-2.

Description	E-value	Query Range	Subject Range
CNEP1_CAEBR - CTD nuclear envelope phosphatase 1 homolog OS=Caenorhabditis briggsae GN=cnep-1 PE=3 SV=1	280.0	[0..1]	[246..1]
gi\|114666484 - gi\|114666484\|ref\|XP_511976.2\| PREDICTED: hypothetical protein LOC455234 [Pan troglodytes]	271.0	[0..6]	[236..128]
gi\|109113077 - gi\|109113077\|ref\|XP_001117997.1\| PREDICTED: similar to dullard homolog [Macaca mulatta]	265.0	[0..6]	[233..10]
gi\|94391670 - gi\|94391670\|ref\|XP_998418.1\| PREDICTED: similar to Dullard homolog [Mus musculus]	265.0	[0..6]	[236..71]
CNEP1_XENLA - CTD nuclear envelope phosphatase 1 OS=Xenopus laevis GN=ctdnep1 PE=1 SV=1	259.0	[0..6]	[236..11]
CNEP1_XENTR - CTD nuclear envelope phosphatase 1 OS=Xenopus tropicalis GN=ctdnep1 PE=2 SV=1	258.0	[0..6]	[236..11]
DULLARD - dullard homolog (Xenopus laevis)	253.0	[0..6]	[236..11]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTIAQSVFC FLAGFFNFFL LYFRKTSRAY CKYQVVKYHS NIPMSPLTTH RLLTVKRKIL  60
   61 VLDLDETLIH SHHDGVLRQT VKPGTPSDFT IRVVIDRHPV KFSVHERPHV DYFLSVVSQW 120
  121 YELVVFTASM EVYGTSVADR LDRGRGILKR RYFRQHCTME VGGYTKDLSA IHPDLSSICI 180
  181 LDNSPGAYRK FPHNAIPIPS WFSDPNDTCL LNLLPFLDAL RFTSDVRSVL SRNMQALPET 240
  241 QSVQYY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.39794
Match:	2hhlA
Description:	No description for 2hhlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits