YRC Public Data Repository - Protein Structure Prediction

Protein:	icd-1
Organism:	Caenorhabditis elegans
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for icd-1.

Description	E-value	Query Range	Subject Range
gi\|89268303 - gi\|89268303\|emb\|CAJ82851.1\| basic transcription factor 3 [Xenopus tropicalis]	271.0	[0..5]	[156..53]
BTF3_MOUSE - Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=1 SV=3	259.0	[0..5]	[155..48]
gi\|109476985 - gi\|109476985\|ref\|XP_001067412.1\| PREDICTED: similar to basic transcription factor 3-like 4 [Rattus n...	259.0	[0..5]	[155..126]
gi\|109077564 - gi\|109077564\|ref\|XP_001100404.1\| PREDICTED: basic transcription factor 3 isoform 2 [Macaca mulatta]	256.0	[0..5]	[155..50]
gi\|208965864 - gi\|208965864\|dbj\|BAG72946.1\| basic transcription factor 3 [synthetic construct] BTF3 - basic transcription factor 3 gi\|55624114 - gi\|55624114\|ref\|XP_517710.1\| PREDICTED: basic transcription factor 3 isoform 3 [Pan troglodytes]	255.0	[0..5]	[155..50]
gi\|157750240 - gi\|157750240\|ref\|XP_001678833.1\| Hypothetical protein CBG04320 [Caenorhabditis briggsae AF16] gi\|39583127, gi\|... - gi\|39583127\|emb\|CAE60667.1\| Hypothetical protein CBG04320 [Caenorhabditis briggsae], gi\|187035914\|em... FL81_10992-RA, C... - RP02422 WBGene00054116 locus:Cre-icd-1 status:Confirmed, null	253.0	[0..1]	[161..1]
gi\|147903121, gi... - gi\|54038475\|gb\|AAH84435.1\| LOC495200 protein [Xenopus laevis], gi\|147903121\|ref\|NP_001088356.1\| hypo...	252.0	[0..5]	[156..6]
gi\|61820463 - gi\|61820463\|ref\|XP_589191.1\| PREDICTED: similar to basic transcription factor 3-like 4 [Bos taurus]	252.0	[0..5]	[155..95]
gi\|60652869, gi\|... - gi\|60652871\|gb\|AAX29130.1\| basic transcription factor 3 [synthetic construct], gi\|60652869\|gb\|AAX291...	251.0	[0..5]	[155..6]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKAIAERI KKLQAQQEHV RIGGKGTPRR KKKVIHKTAA ADDKKLQSNL KKLSVTNIPG  60
   61 IEEVNMIKDD GTVIHFNNPK VQTSVPANTF SVTGSADNKQ ITEMLPGILN QLGPESLTHL 120
  121 KKLANNVTKL GPDGKGEDED VPELVGDFDA ASKNETKADE Q

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.508638
Match:	PF01849.9
Description:	No description for PF01849.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits