YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE02543
Organism: Caenorhabditis elegans
Length: 236 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02543.

Description E-value Query
Range
Subject
Range
gi|39590244, gi|... - gi|39590244|emb|CAE65982.1| Hypothetical protein CBG11171 [Caenorhabditis briggsae], gi|187030504|em...
gi|157750360 - gi|157750360|ref|XP_001678893.1| Hypothetical protein CBG11171 [Caenorhabditis briggsae AF16]
398.0 [0..8] [236..1]

Back

Predicted Domain #1
Region A:
Residues: [1-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKHFNMIL KLALISSLLA LAASRTHLTD CLDDHKYCVG LPRGCVGTEC NFAFSSISNG  60
   61 THTEIEIFGN SVIDKTWLAI GYSADKKMED DFVVFCIRDD AGTNMNKLDQ MAGLAYNGKH 120
  121 SNEMTGTIEN IKKNKNDKFG LDLEMKEYEK DEQTLYCKMA HRVEPIIDRF NVSKVEILMA 180
  181 KGTWMKGGLS YHGNTRNNTG IIDLSGESKH KRKNSAVGSL ALVSSAITFL AAKMLF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.89
Match: 1d7cA
Description: Cytochrome domain of cellobiose dehydrogenase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle