YRC Public Data Repository - Protein Structure Prediction

Protein:	hsp-25
Organism:	Caenorhabditis elegans
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp-25.

Description	E-value	Query Range	Subject Range
hsp-25 - status:Confirmed UniProt:Q86GU1 protein_id:AAO61437.1	170.0	[0..15]	[219..1]
gi\|157770025 - gi\|157770025\|ref\|XP_001676833.1\| Hypothetical protein CBG14817 [Caenorhabditis briggsae AF16] gi\|39598163, gi\|... - gi\|39598163\|emb\|CAE68855.1\| Hypothetical protein CBG14817 [Caenorhabditis briggsae], gi\|187028168\|em...	158.0	[0..15]	[219..1]
gi\|58378929, gi\|... - gi\|58378929\|ref\|XP_309128.2\| ENSANGP00000023810 [Anopheles gambiae str. PEST], gi\|55245005\|gb\|EAA453...	148.0	[0..15]	[216..83]
gi\|1206025 - gi\|1206025\|gb\|AAB08736.1\| p27	146.0	[0..12]	[218..12]
gi\|110757651, gi... - ref\|XP_392405.1\| similar to CG14207-PB [Apis mellifera], gi\|110757651\|ref\|XP_392405.3\| PREDICTED: si...	145.0	[0..17]	[211..7]
gi\|220954222, gi... - gi\|220954222\|gb\|ACL89654.1\| CG14207-PA [synthetic construct], gi\|220944432\|gb\|ACL84759.1\| CG14207-PA... gi\|54643807, gi\|... - gi\|54643807\|gb\|EAL32550.1\| GA12823-PA [Drosophila pseudoobscura], gi\|125983452\|ref\|XP_001355491.1\| G... FBpp0311833, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG14207 (CG14207, FBgn0031037). It is a prote...	143.0	[0..14]	[211..3]
gi\|108883589, gi... - gi\|157114201\|ref\|XP_001657983.1\| hypothetical protein AaeL_AAEL001094 [Aedes aegypti], gi\|108883589\|...	138.0	[0..15]	[216..5]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTYTRTYSY SKREMSERRI DVNRSNYSVI DNEFGNMRDR FEQEMRRVEE EMKRLRSEFE  60
   61 GYRPNGGPPA AISNQPYNAY SNTSSHHETS NRTGGFGSPL PPPSFHGPSD LMAHRPTYDP 120
  121 YLDNLKSPLI KDESDGKTLR LRFDVANYKP EEVTVKTIDN RLLVHAKHEE KTPQRTVFRE 180
  181 YNQEFLLPRG TNPEQISSTL STDGVLTVEA PLPQLAIQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.39794
Match:	2bolA
Description:	CRYSTAL STRUCTURE AND ASSEMBLY OF TSP36, A METAZOAN SMALL HEAT SHOCK PROTEIN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits