YRC Public Data Repository - Protein Structure Prediction

Protein:	vha-9
Organism:	Caenorhabditis elegans
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vha-9.

Description	E-value	Query Range	Subject Range
VATF1_DROPS - V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura pseudoobscura GN=Vha14 PE=2 SV=2 VATF1_DROPS - Vacuolar ATP synthase subunit F - Drosophila pseudoobscura (Fruit fly) gi\|195171787, gi... - gi\|195171787\|ref\|XP_002026685.1\| GL11862 [Drosophila persimilis], gi\|194111611\|gb\|EDW33654.1\| GL1186...	174.0	[0..1]	[120..3]
ATP6V1F - ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F gi\|114658592, gi... - gi\|114658594\|ref\|XP_001160789.1\| PREDICTED: similar to ATPase, H+ transporting, lysosomal 14kD, V1 s...	174.0	[0..4]	[121..2]
gi\|194193659, gi... - gi\|195583692\|ref\|XP_002081650.1\| GD25605 [Drosophila simulans], gi\|194193659\|gb\|EDX07235.1\| GD25605 ... gi\|195488498, gi... - gi\|195488498\|ref\|XP_002092341.1\| GE14140 [Drosophila yakuba], gi\|194178442\|gb\|EDW92053.1\| GE14140 [D... gi\|194125972, gi... - gi\|195334675\|ref\|XP_002034002.1\| GM20126 [Drosophila sechellia], gi\|194125972\|gb\|EDW48015.1\| GM20126... Vha14-PA - The gene Vacuolar H<sup>+</sup> ATPase 14kD subunit is referred to in FlyBase by the symbol Dmel\Vha... gi\|194882763, gi... - gi\|194882763\|ref\|XP_001975480.1\| GG22339 [Drosophila erecta], gi\|190658667\|gb\|EDV55880.1\| GG22339 [D...	173.0	[0..1]	[120..3]
gi\|187038731, gi... - gi\|39589095\|emb\|CAE57827.1\| Hypothetical protein CBG00852 [Caenorhabditis briggsae], gi\|187038731\|em... gi\|157749105 - gi\|157749105\|ref\|XP_001678266.1\| Hypothetical protein CBG00852 [Caenorhabditis briggsae AF16]	172.0	[0..1]	[121..1]
VATF_BOVIN - V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2	172.0	[0..4]	[121..2]
VATF_MOUSE - V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2 VATF_RAT - V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1	172.0	[0..4]	[121..2]
gi\|57095928 - gi\|57095928\|ref\|XP_532431.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit F [Canis fami...	172.0	[0..4]	[121..2]
gi\|91076898 - gi\|91076898\|ref\|XP_975016.1\| PREDICTED: similar to vacuolar ATP synthase subunit F [Tribolium castan...	171.0	[0..1]	[120..3]
VATF_AEDAE - V-type proton ATPase subunit F OS=Aedes aegypti GN=AAEL002464 PE=2 SV=1	171.0	[0..1]	[120..3]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAAKGKIL AVIGDEDTVV GFLLGGVGEL NKARKPNYLI VDKQTTVQEI EEAFNGFCAR  60
   61 DDIAIILINQ HIAEMIRYAV DNHTQSIPAV LEIPSKEAPY DPSKDSILNR ARGLFNPEDF 120
  121 R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2qaiA
Description:	No description for 2qaiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits