YRC Public Data Repository - Protein Structure Prediction

Protein:	mdt-22
Organism:	Caenorhabditis elegans
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mdt-22.

Description	E-value	Query Range	Subject Range
gi\|31652218, gi\|... - gi\|5803183\|ref\|NP_006743.1\| surfeit 5 isoform a [Homo sapiens], gi\|55958178\|emb\|CAI12828.1\| surfeit ... gi\|60822577 - gi\|60822577\|gb\|AAX36614.1\| surfeit 5 [synthetic construct]	203.0	[0..18]	[153..9]
gi\|149039244 - gi\|149039244\|gb\|EDL93464.1\| similar to surfeit 5 isoform b (predicted), isoform CRA_b [Rattus norveg... MED22_MOUSE, SUR... - Surfeit locus protein 5 - Mus musculus (Mouse), (Q62276) Surfeit locus protein 5, Mediator of RNA po... tr\|G3I9S4\|G3I9S4... - Mediator of RNA polymerase II transcription subunit 22 OS=Cricetulus griseus GN=I79_020333 PE=4 SV=1	203.0	[0..18]	[153..9]
ENSCJAT00000035050 - null gi\|109109904 - gi\|109109904\|ref\|XP_001101486.1\| PREDICTED: similar to Surfeit locus protein 5 isoform 2 [Macaca mul... gi\|55632551 - gi\|55632551\|ref\|XP_528453.1\| PREDICTED: similar to SURF-5 protein [Pan troglodytes]	203.0	[0..18]	[153..9]
gi\|73967578 - gi\|73967578\|ref\|XP_537799.2\| PREDICTED: similar to Surfeit locus protein 5 isoform 1 [Canis familiar...	203.0	[0..18]	[153..9]
gi\|28866783, gi\|... - gi\|28866783\|dbj\|BAC65168.1\| Surf5 [Gallus gallus], gi\|113951655\|ref\|NP_001039295.1\| mediator complex...	201.0	[0..18]	[153..9]
gi\|148725474, gi... - gi\|50344944\|ref\|NP_001002144.1\| mediator complex subunit 22 [Danio rerio], gi\|47939383\|gb\|AAH71397.1...	200.0	[0..18]	[153..9]
MED22_CAEBR - Mediator of RNA polymerase II transcription subunit 22 OS=Caenorhabditis briggsae GN=mdt-22 PE=3 SV=... gi\|157749103 - gi\|157749103\|ref\|XP_001678265.1\| Hypothetical protein CBG00854 [Caenorhabditis briggsae AF16]	200.0	[0..4]	[156..1]
MED22_BOVIN - Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus GN=MED22 PE=2 SV=1	198.0	[0..18]	[140..9]
gi\|2826824 - gi\|2826824\|emb\|CAA75447.1\| surfeit protein 5 [Takifugu rubripes]	198.0	[0..18]	[153..9]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVAGGASK KSSSRTMATK KLIIDEFKRR LRDNIKSLND NFFHIIQAAK VNPDDNAYKN  60
   61 QTGKMTEFYT TKNEMAVRAQ LMVRASDELL KLTADLKEFL ILHDFHFLTH NIKQAEAQCE 120
  121 ETLRQQSHQH NCLDSEVSNI LFDLEREIAE NFYLRHT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	92.886057
Match:	PF06179.3
Description:	No description for PF06179.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits