YRC Public Data Repository - Protein Structure Prediction

Protein:	flp-3
Organism:	Caenorhabditis elegans
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for flp-3.

Description	E-value	Query Range	Subject Range
gi\|39591000, gi\|... - gi\|39591000\|emb\|CAE58780.1\| Hypothetical protein CBG01978 [Caenorhabditis briggsae], gi\|187037727\|em... gi\|157767972 - gi\|157767972\|ref\|XP_001675807.1\| Hypothetical protein CBG01978 [Caenorhabditis briggsae AF16]	155.0	[0..1]	[184..1]
FAR2_HELAS - FMRFamide-related peptides type HF-1 OS=Helix aspersa PE=1 SV=1	114.0	[0..25]	[184..199]
gi\|84551 - gi\|84551\|pir\|\|A25790 FMRFamide neuropeptide precursor - California sea hare	113.0	[0..17]	[184..225]
gi\|2664222 - gi\|2664222\|emb\|CAA10949.1\| neuropeptide FMRFamide precursor [Mytilus edulis]	108.0	[0..26]	[184..172]
FMRF_LYMST - FMRFamide neuropeptides OS=Lymnaea stagnalis PE=1 SV=2	106.0	[0..37]	[176..150]
FMRF_DOROP - FMRFamide-related neuropeptides OS=Doryteuthis opalescens GN=FMRFa PE=1 SV=1 gi\|10732800 - gi\|10732800\|gb\|AAG22544.1\|AF303160_1 FMRFamide [Loligo opalescens]	103.0	[0..22]	[184..161]
gi\|407306 - gi\|407306\|gb\|AAA03426.1\| FMRFamide precursor	102.0	[0..25]	[184..154]
FMRF_SEPOF - FMRFamide-related neuropeptides OS=Sepia officinalis GN=FMRFa PE=1 SV=1	101.0	[0..22]	[184..161]

Back

Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISPNHLILL FCVNCAFLVA SDATPKRSPL GTMRFGKRAI ADEMTFEEDG YYPSNVMWKR  60
   61 STVDSSEPVI RDQRTPLGTM RFGKRSAEPF GTMRFGKRNP ENDTPFGTMR FGKRASEDAL 120
  121 FGTMRFGKRE DGNAPFGTMK FGKREAEEPL GTMRFGKRSA DDSAPFGTMR FGKRNPLGTM 180
  181 RFGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits