YRC Public Data Repository - Protein Structure Prediction

Protein:	cchl-1
Organism:	Caenorhabditis elegans
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cchl-1.

Description	E-value	Query Range	Subject Range
gi\|39597320, gi\|... - gi\|39597320\|emb\|CAE59548.1\| Hypothetical protein CBG02944 [Caenorhabditis briggsae], gi\|187037001\|em... gi\|157751262 - gi\|157751262\|ref\|XP_001679343.1\| Hypothetical protein CBG02944 [Caenorhabditis briggsae AF16]	476.0	[0..1]	[280..1]
CCHL_MOUSE - Cytochrome c-type heme lyase OS=Mus musculus GN=Hccs PE=1 SV=2	373.0	[0..1]	[257..1]
gi\|74007107 - gi\|74007107\|ref\|XP_537950.2\| PREDICTED: similar to Cytochrome c-type heme lyase (CCHL) (Holocytochro... gi\|29437340 - gi\|29437340\|gb\|AAH49998.1\| Similar to holocytochrome c synthase (cytochrome c heme-lyase) [Mus muscu...	371.0	[0..1]	[257..1]
gi\|109511686, gi... - gi\|109511686\|ref\|XP_001065465.1\| PREDICTED: similar to Cytochrome c-type heme lyase (CCHL) (Holocyto...	366.0	[0..1]	[257..1]
gi\|220943808 - gi\|220943808\|gb\|ACL84447.1\| Cchl-PA [synthetic construct] FBpp0307185, Cchl-PA - The gene Cytochrome c heme lyase is referred to in FlyBase by the symbol Dmel\Cchl (CG6022, FBgn0038...	366.0	[0..16]	[260..12]
gi\|190690255, gi... - gi\|190691629\|gb\|ACE87589.1\| holocytochrome c synthase (cytochrome c heme-lyase) protein [synthetic c... HCCS - holocytochrome c synthase	357.0	[0..1]	[257..1]
gi\|58380235, gi\|... - gi\|58380235\|ref\|XP_310401.2\| AGAP003843-PA [Anopheles gambiae str. PEST], gi\|55243971\|gb\|EAA06088.2\|... AGAP003843-PA - cytochrome c heme-lyase\|protein_coding\|2R:44296234:44297070:-1\|gene:AGAP003843	356.0	[0..4]	[260..17]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSQSTPKV QDANADAERI RKAQHSMAAA GGGSQCPLTP EQRAAASGEN CGAGGACPVG  60
   61 ADKASINPLN NELEHPNQKP APDQPFALPT KREKSTIPKA GTETETWTYP SPQMFWNAML 120
  121 KKGWRWQDDS LSKSDMENII SIHNANNEEA WREVLKWENL LHPECAEPKL KSFKGDAKNL 180
  181 SPRARFRNLF LGY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [194-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLPFDRHDWI VDRCGTKQVQ YVIDYYDGGA VDPSSKLFTI LDVRPAVNDI GNIWDRMVVA  60
   61 YWRFKFETLG FTPSLPIPPT EGHNVNH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits