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View Structure Prediction Details

Protein: CE02326
Organism: Caenorhabditis elegans
Length: 395 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02326.

Description E-value Query
Range
Subject
Range
gi|39597321, gi|... - gi|39597321|emb|CAE59549.1| Hypothetical protein CBG02945 [Caenorhabditis briggsae], gi|187037000|em...
gi|157751260 - gi|157751260|ref|XP_001679342.1| Hypothetical protein CBG02945 [Caenorhabditis briggsae AF16]
376.0 [0..1] [395..1]

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Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLLASKQLT KFSQLPRVSL LSQGIQNVRQ GFRRNFGISV KDVDDKSRKR IGWWLMGCAG  60
   61 MCYGAVALGG VTRLTESGLS MVNWDLFRTM KPPFGQKQWE EEFEKYKAYP EYKYKSSSEE 120
  121 MTLNEFKFIW SMEYGHRMWG RAIGIVFLIP CAYFWARGRF APDMKRRMAL ATTLLLAQGG 180
  181 IGWWMVKSGL DPSKNSS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [198-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVPRVSQYRL ATHLTMAFVL YSIFFWNGLS HLVKPHDLSK VRSKLGALRG MTHGSKLMVF  60
   61 STAIMGAFVA GLDAGLVYNS WPKFAENWIP ENMLSRSPTW KNFFENDVTV QFVHRNLAYL 120
  121 TVISVLSTFL IGRRAPIPKR TRMALNLTVA AVFGQAALGV FTLINYVPVW LAACHQSGSM 180
  181 ALLSSVLWLS HELRRLPK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle