YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02290
Organism:	Caenorhabditis elegans
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02290.

Description	E-value	Query Range	Subject Range
gi\|115973522, gi... - gi\|115973522\|ref\|XP_001191584.1\| PREDICTED: similar to mitochondrial truncated thioredoxin-dependent...	137.0	[0..3]	[149..76]
gi\|88787696, gi\|... - gi\|88808708\|ref\|ZP_01124218.1\| thioredoxin peroxidase [Synechococcus sp. WH 7805], gi\|88787696\|gb\|EA...	136.0	[0..3]	[145..11]
gi\|632720 - gi\|632720\|gb\|AAB32034.1\| TSA=thiol-specific antioxidant [rats, brain, Peptide, 198 aa] PRDX2_RAT - Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1 SV=3	136.0	[0..3]	[145..10]
PRDX2_CRIGR - Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3	136.0	[0..3]	[145..10]
gi\|51892064, gi\|... - gi\|51892064\|ref\|YP_074755.1\| 2-cys peroxiredoxin [Symbiobacterium thermophilum IAM 14863], gi\|518557...	135.0	[0..3]	[146..6]
gi\|109123569 - gi\|109123569\|ref\|XP_001108992.1\| PREDICTED: peroxiredoxin 2 isoform 1 [Macaca mulatta]	135.0	[0..3]	[145..10]
PRDX2_PONAB - Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3 PRDX2_PONPY - Peroxiredoxin-2 - Pongo pygmaeus (Orangutan)	135.0	[0..3]	[145..10]
gi\|62901916 - gi\|62901916\|gb\|AAY18909.1\| thioredoxin peroxidase 1-like [synthetic construct]	134.0	[0..3]	[145..34]
gi\|3603241 - gi\|3603241\|gb\|AAC35744.1\| type II peroxiredoxin 1 [Mus musculus]	134.0	[0..3]	[145..10]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELLAGTKL INQDSEELDA GEHLKGKVVG LYFSASWCPP CRQFTPKLTR FFDEIRKKHP  60
   61 EFEVVFVSRD REDGDLREYF LEHMGAWTAI PFGTPRIQEL LEQYEVKTIP SMRIVKPNGD 120
  121 VVVQDARTEI QDKGNDPEAL WEEWLAFYD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1qmvA
Description:	Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits