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View Structure Prediction Details

Protein: CE02283
Organism: Caenorhabditis elegans
Length: 128 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02283.

Description E-value Query
Range
Subject
Range
gi|114627384 - gi|114627384|ref|XP_001153928.1| PREDICTED: similar to L7a protein [Pan troglodytes]
166.0 [0..6] [125..210]
gi|21070334 - gi|21070334|gb|AAM34260.1|AF508309_1 ribosomal protein L7a [Equus caballus]
157.0 [0..6] [125..64]
gi|94386298, gi|... - gi|94387462|ref|XP_992877.1| PREDICTED: similar to 60S ribosomal protein L7a (Surfeit locus protein ...
155.0 [0..6] [125..120]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDGVNPKA FPLADTNLSQ KLMDLVQQAM NYKQLKKGAN EATKTLNRGI SEIIVMAADA  60
   61 EPLEILLHLP LLCEDKNVPY VFVRSKAALG RACGVTRPVI AASITQNEGS QLKSQIQKIK 120
  121 EDVEKLLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 2ozbA
Description: No description for 2ozbA was found.

Predicted functions:

Term Confidence Notes
5.75333813716704 bayes_pls_golite062009
RNA binding 5.39762744650785 bayes_pls_golite062009
snoRNA binding 4.95788328272916 bayes_pls_golite062009
structural constituent of ribosome 3.68798692352408 bayes_pls_golite062009
structural molecule activity 3.12718364266877 bayes_pls_golite062009
mRNA binding 2.62944559104613 bayes_pls_golite062009
nucleic acid binding 2.39301463005357 bayes_pls_golite062009
binding 2.34187530323842 bayes_pls_golite062009
protein binding 0.381324299701367 bayes_pls_golite062009
catalytic activity 0.264002643439785 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle