YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02268
Organism:	Caenorhabditis elegans
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02268.

Description	E-value	Query Range	Subject Range
gi\|74006830 - gi\|74006830\|ref\|XP_537947.2\| PREDICTED: similar to ADP/ATP translocase 3 (Adenine nucleotide translo...	277.0	[0..1]	[290..173]
gi\|68366574 - gi\|68366574\|ref\|XP_694733.1\| PREDICTED: similar to ADP,ATP carrier protein 2 (ADP/ATP translocase 2)...	271.0	[0..1]	[291..15]
gi\|114597246 - gi\|114597246\|ref\|XP_517556.2\| PREDICTED: solute carrier family 25 (mitochondrial carrier; adenine nu...	270.0	[0..9]	[290..211]
ADT1_BOVIN - ADP/ATP translocase 1 OS=Bos taurus GN=SLC25A4 PE=1 SV=3	268.0	[0..1]	[290..1]
gi\|45360469, gi\|... - gi\|89271383\|emb\|CAJ82932.1\| slc25a5 [Xenopus tropicalis], gi\|89268733\|emb\|CAJ82402.1\| slc25a5 [Xenop...	268.0	[0..1]	[290..1]
gi\|62089230 - gi\|62089230\|dbj\|BAD93059.1\| ADP,ATP carrier protein, liver isoform T2 variant [Homo sapiens]	267.0	[0..1]	[290..26]
gi\|53127328, gi\|... - gi\|57530120\|ref\|NP_001006443.1\| solute carrier family 25 (mitochondrial carrier; adenine nucleotide ...	267.0	[0..1]	[290..1]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIPDLTNYE HLIGGLCGGV TSTVVCHPFD LLKIRFSANE GSSLRPQYSS YADAVRKIVR  60
   61 VEGVRGLYQG WTPSLIGASL SWGLYFQWYN SLRTKIYENF STGSKLANNL ISGCISGSAI 120
  121 MCITNPIWLT KTRLCLQYEN QQSKKYAGMM DCLKKTVKQE GFFGLYRGFV TGVIGTTHGA 180
  181 VQIAAYSWII DKRCQSQGLP KDSFLSQTDY VIASSTSKVL ATTITFPYQV LRTRMQDHNT 240
  241 DSRGVWKTTL KTIHNEGIGG LWKGCLIANV RQLPAAVVTF LTYENVKRLV GMTKQI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.045757
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits