| Protein: | puf-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 553 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for puf-5.
| Description | E-value | Query Range |
Subject Range |
|
|
443.0 | [0..3] | [523..703] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MSDSTGRINS KASDSSSISD HQTADLSIFN GSFDGGAFSS SNIPLFNFMG TGNQRFQYSP 60
61 HPFAKSSDPC RLAALTPSTP KGPLNLTPAD FGLADFSVGN ESFADFTANN TSFVGNVQSN 120
121 VRSTRLLPAW AVD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [134-553] |
1 11 21 31 41 51
| | | | | |
1 NSGNIRDDLT LQDVVSNGSL IDFAMDRTGV KFLERHFPED HDNEMHFVLF DKLTEQGAVF 60
61 TSLCRSAAGN FIIQKFVEHA TLDEQERLVR KMCDNGLIEM CLDKFACRVV QMSIQKFDVS 120
121 IAMKLVEKIS SLDFLPLCTD QCAIHVLQKV VKLLPISAWS FFVKFLCRDD NLMTVCQDKY 180
181 GCRLVQQTID KLSDNPKLHC FNTRLQLLHG LMTSVARNCF RLSSNEFANY VVQYVIKSSG 240
241 VMEMYRDTII EKCLLRNILS MSQDKYASHV VEGAFLFAPP LLLSEMMDEI FDGYVKDQET 300
301 NRDALDILLF HQYGNYVVQQ MISICISALL GKEERKMVAS EMRLYAKWFD RIKNRVNRHS 360
361 GRLERFSSGK KIIESLQKLN VPMTMTNEPM PYWAMPTPLM DISAHFMNKL NFQKNSVFDE 420
421
|
| Detection Method: | |
| Confidence: | 102.0 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.26369929333742 | bayes_pls_golite062009 |
| protein binding | 1.03486879911164 | bayes_pls_golite062009 |
