YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: bcs-1
Organism: Caenorhabditis elegans
Length: 442 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bcs-1.

Description E-value Query
Range
Subject
Range
gi|15891238, gi|... - gi|15891238|ref|NP_356910.1| hypothetical protein AGR_L_2253 [Agrobacterium tumefaciens str. C58], g...
gi|25308068 - pir||E98271 metalloproteinase ftsH (AJ243808) [imported] - Agrobacterium tumefaciens (strain C58, Ce...
322.0 [0..18] [442..3]

Back

Predicted Domain #1
Region A:
Residues: [1-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENPVVSDK KPGPSKDSSF FSDLYDNLNQ NPYFNAGAGL AGIGIAMSFL RRTAQISNTY  60
   61 FRRRFMINLQ INNEDAAYPW LLDFINNRSA TQTRNLSANT VVHQAESGKT ELSISFLPGH 120
  121 GTHFFVHDYR WIKVERQREK QVIQRDGIRT PFETVTLTTL GSDVKFFKRM LEQSAKEAID 180
  181 NAETGLVIYQ AVGPQWIRFG VPRKKRDIES VILDGRICEE LVEDFQEFIS SATWYADRGV 240
  241 PYRRGYLFYG PPGTGKSSFI SALASHFGYS VCLLSLSERT LDDDRLNHLL NTAPPNSVVI 300
  301 LEDIDAAFVS REDPMSNHPA YQGLSRVTFS GLLNALDGVA CAEERLTFMT TNYVERLDPA 360
  361 LIRPGRVDRK QYFGNATDGM LSKMFSRFYR QPSDSVLADE FVKRVSEHKT ELSPAMIQGH 420
  421 FLMYKQDPRA ALDNIKNMFK TV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.0
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle