YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02218
Organism:	Caenorhabditis elegans
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02218.

Description	E-value	Query Range	Subject Range
gi\|157768414 - gi\|157768414\|ref\|XP_001676028.1\| Hypothetical protein CBG17377 [Caenorhabditis briggsae AF16] gi\|187025857, gi... - gi\|39594801\|emb\|CAE70669.1\| Hypothetical protein CBG17377 [Caenorhabditis briggsae], gi\|187025857\|em...	171.0	[0..1]	[210..1]
gi\|62901922 - gi\|62901922\|gb\|AAY18912.1\| adenylate kinase 1 [synthetic construct]	168.0	[0..3]	[207..15]
gi\|10946936, gi\|... - gi\|5725312\|emb\|CAB52408.1\| membrane-associated adenylate kinase [Mus musculus], gi\|32449848\|gb\|AAH54...	166.0	[0..16]	[207..20]
KAD1_RAT - Adenylate kinase isoenzyme 1 OS=Rattus norvegicus GN=Ak1 PE=1 SV=3	166.0	[0..16]	[207..4]
gi\|73949911 - gi\|73949911\|ref\|XP_535321.2\| PREDICTED: similar to Adenylate kinase isoenzyme 2, mitochondrial (ATP-...	164.0	[0..1]	[209..1]
KAD_METBF - Adenylate kinase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=adk PE=3 SV=1	164.0	[0..21]	[205..1]
KAD1_CHICK - Adenylate kinase isoenzyme 1 OS=Gallus gallus GN=AK1 PE=1 SV=1	164.0	[0..12]	[206..1]
gi\|66361358, gi\|... - gi\|66361360\|pdb\|1Z83\|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a, gi\|66361359\|pd...	164.0	[0..16]	[208..5]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTVERKNI NLAPLKAAGV PIFFIVGGPG SGKGTQCDKI VAKYGLTHLS SGDLLRDEVK  60
   61 SGSPRGAQLT AIMESGALVP LEVVLDLVKE AMLKAIEKGS KGFLIDGYPR EVAQGQQFES 120
  121 EIQEAKLVLF FDVAEETLVK RLLHRAQTSG RADDNADTIK KRLHTFVTST APVVDYYESK 180
  181 GKLVRINAEG SVDDIFAVVV ANLDKATSKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1z83A
Description:	Crystal structure of human AK1A in complex with AP5A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits