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View Structure Prediction Details

Protein: cut-1
Organism: Caenorhabditis elegans
Length: 424 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cut-1.

Description E-value Query
Range
Subject
Range
gi|39597314, gi|... - gi|39597314|emb|CAE59542.1| Hypothetical protein CBG02937 [Caenorhabditis briggsae], gi|187037007|em...
gi|157751274 - gi|157751274|ref|XP_001679349.1| Hypothetical protein CBG02937 [Caenorhabditis briggsae AF16]
315.0 [0..1] [424..1]

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Predicted Domain #1
Region A:
Residues: [1-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWKPIICLA ALVLSASAIP VDNNVEGEPE VECGPNSITV NFNTRNPFEG HVYVKGLYDQ  60
   61 AGCRSDEGGR QVAGIELPFD SCNTARTRSL NPKGVFVSTT VVISFHPQFV TKVDRAYRIQ 120
  121 CFYMESDKTV STQIEVSDLT TAFQTQVVPM PVCKYEILDG GPSGQPIQFA TIGQQVYHKW 180
  181 TCDSETTDTF CAVVHSCTVD DGNGDTVQIL NEEGCALDKF LLNNLEYPTD LMAGQEAHVY 240
  241 KYADRSQLFY QCQISITIKD PGSECARPTC SEPQGFGAVK QAGAGGAHAA AAPQAGVEEV 300
  301 QAAPVAAAAP VAAPV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.955
Match: 2qfhA
Description: No description for 2qfhA was found.

Predicted Domain #2
Region A:
Residues: [316-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAAAAPAVP RATLAQLRLL RKKRSFGENE GILDVRVEIN TLDIMEGASP SAPEAAALVS  60
   61 EESVRRRATS TGICLTPIGF ASFLGIGTIV ATALSATIFY VARPTSHKH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle