YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02109
Organism:	Caenorhabditis elegans
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02109.

Description	E-value	Query Range	Subject Range
gi\|196158491, gi... - gi\|88794338\|ref\|ZP_01110047.1\| uroporphyrin-III C-methyltransferase [Alteromonas macleodii 'Deep eco...	233.0	[0..3]	[272..238]
gi\|29895119, gi\|... - gi\|30019575\|ref\|NP_831206.1\| uroporphyrin-III C-methyltransferase [Bacillus cereus ATCC 14579], gi\|2... gi\|229043267, gi... - gi\|229043267\|ref\|ZP_04190989.1\| Uroporphyrinogen-III C-methyltransferase [Bacillus cereus AH676], gi... gi\|229144126, gi... - gi\|229144126\|ref\|ZP_04272541.1\| Uroporphyrinogen-III C-methyltransferase [Bacillus cereus BDRD-ST24]... gi\|229126841, gi... - gi\|229126841\|ref\|ZP_04255853.1\| Uroporphyrinogen-III C-methyltransferase [Bacillus cereus BDRD-Cer4]... gi\|228674452, gi... - gi\|229108983\|ref\|ZP_04238584.1\| Uroporphyrinogen-III C-methyltransferase [Bacillus cereus Rock1-15],...	232.0	[0..2]	[272..4]
gi\|77962694, gi\|... - gi\|77962694\|ref\|ZP_00826511.1\| COG0007: Uroporphyrinogen-III methylase [Yersinia mollaretii ATCC 439...	229.0	[0..3]	[272..218]
gi\|75760415, gi\|... - gi\|75760415\|ref\|ZP_00740458.1\| Uroporphyrin-III C-methyltransferase [Bacillus thuringiensis serovar ...	229.0	[0..2]	[272..4]
gi\|172082779, gi... - gi\|177651501\|ref\|ZP_02934290.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. A0174]... gi\|190568070, gi... - gi\|190568070\|ref\|ZP_03020980.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis Tsiankovski... gi\|49481078, gi\|... - gi\|49481078\|ref\|YP_035642.1\| uroporphyrin-III C-methyltransferase [Bacillus thuringiensis serovar ko... gi\|195992114, gi... - gi\|196035437\|ref\|ZP_03102842.1\| uroporphyrin-III C-methyltransferase [Bacillus cereus W], gi\|1959921... gi\|49184352, gi\|... - gi\|49184352\|ref\|YP_027604.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. Sterne], ... gi\|196021838, gi... - gi\|196047327\|ref\|ZP_03114541.1\| uroporphyrin-III C-methyltransferase [Bacillus cereus 03BB108], gi\|1... gi\|218902634, gi... - gi\|218902634\|ref\|YP_002450468.1\| uroporphyrin-III C-methyltransferase [Bacillus cereus AH820], gi\|21... gi\|165870438, gi... - gi\|165870438\|ref\|ZP_02215093.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. A0488]... gi\|47501868, gi\|... - gi\|47526720\|ref\|YP_018069.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. 'Ames Anc... gi\|167530326, gi... - gi\|167634438\|ref\|ZP_02392759.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. A0442]... gi\|30261524, gi\|... - gi\|30261524\|ref\|NP_843901.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. Ames], gi... gi\|167512791, gi... - gi\|167639352\|ref\|ZP_02397624.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. A0193]... gi\|65318791, gi\|... - gi\|65318791\|ref\|ZP_00391750.1\| COG0007: Uroporphyrinogen-III methylase [Bacillus anthracis str. A201... gi\|170686835, gi... - gi\|170686835\|ref\|ZP_02878055.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. A0465]... gi\|170706209, gi... - gi\|170706209\|ref\|ZP_02896670.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. A0389]... gi\|227006993, gi... - gi\|227815726\|ref\|YP_002815735.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. CDC 6... gi\|228845553, gi... - gi\|228914100\|ref\|ZP_04077720.1\| Uroporphyrinogen-III C-methyltransferase [Bacillus thuringiensis ser... gi\|228814568, gi... - gi\|228945124\|ref\|ZP_04107484.1\| Uroporphyrinogen-III C-methyltransferase [Bacillus thuringiensis ser... gi\|228599764, gi... - gi\|229183721\|ref\|ZP_04310941.1\| Uroporphyrinogen-III C-methyltransferase [Bacillus cereus BGSC 6E1],... gi\|229603342, gi... - gi\|229603342\|ref\|YP_002865937.1\| uroporphyrinogen-III C-methyltransferase [Bacillus anthracis str. A... gi\|254682411 - gi\|254682411\|ref\|ZP_05146272.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. CNEVA-... gi\|254726075 - gi\|254726075\|ref\|ZP_05187857.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. A1055] gi\|254733827 - gi\|254733827\|ref\|ZP_05191541.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. Wester... gi\|254740481 - gi\|254740481\|ref\|ZP_05198172.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. Kruger... gi\|254753872 - gi\|254753872\|ref\|ZP_05205907.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. Vollum... gi\|254758967 - gi\|254758967\|ref\|ZP_05210994.1\| uroporphyrin-III C-methyltransferase [Bacillus anthracis str. Austra...	228.0	[0..2]	[272..3]
CYSG_SHIB3 - Siroheme synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=cysG PE=3 SV=1 CYSG_SHIBS - Siroheme synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=cysG PE=3 SV=1	228.0	[0..3]	[272..218]
gi\|24053835, gi\|... - gi\|24114633\|ref\|NP_709143.1\| siroheme synthase [Shigella flexneri 2a str. 301], gi\|24053835\|gb\|AAN44... CYSG_SHIF8 - Siroheme synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=cysG PE=3 SV=1 gi\|30065346, gi\|... - gi\|30065346\|ref\|NP_839517.1\| siroheme synthase [Shigella flexneri 2a str. 2457T], gi\|30043608\|gb\|AAP... CYSG_SHISS - Siroheme synthase OS=Shigella sonnei (strain Ss046) GN=cysG PE=3 SV=1 CYSG_SHIFL - Siroheme synthase OS=Shigella flexneri GN=cysG PE=3 SV=1	227.0	[0..3]	[272..218]
gi\|42736543, gi\|... - gi\|42780623\|ref\|NP_977870.1\| uroporphyrin-III C-methyltransferase [Bacillus cereus ATCC 10987], gi\|4...	227.0	[0..2]	[272..3]
gi\|88798713, gi\|... - gi\|88798713\|ref\|ZP_01114296.1\| Uroporphyrin-III C-methyltransferase-like protein [Reinekea sp. MED29...	227.0	[0..3]	[274..215]
gi\|27316645, gi\|... - gi\|27469096\|ref\|NP_765733.1\| uroporphyrin-III C-methyltransferase [Staphylococcus epidermidis ATCC 1...	227.0	[0..2]	[272..6]

Back

Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFYLIGLGL GDVEDITVKG LNIVKNCARV HLEAYTSILC YGLDKTNLEK FYGREIIEAD  60
   61 RTVVEQESDA ILNGADKEDV ALLVVGDPFG ATTHADLVLR AKQQNIPVKV IHNASIMNAV 120
  121 GCCGLQLYNF GETVSIVMWT DEWQPESYYD KIALNRKRGM HTLCLLDIKT KEQTVENMMR 180
  181 GRKIFEPARY QKCSEAARQL LTIYERRKAK GEECAYDENT MVVGLARVGW DNQKIVYASM 240
  241 KDMSEMEMGE PLHSLIIPGE THPLEVDMLE TFRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2dv3A
Description:	No description for 2dv3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits