YRC Public Data Repository - Protein Structure Prediction

Protein:	gar-2
Organism:	Caenorhabditis elegans
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gar-2.

Description	E-value	Query Range	Subject Range
gi\|73987082 - gi\|73987082\|ref\|XP_542105.2\| PREDICTED: similar to olfactory receptor Olr1121 [Canis familiaris]	268.0	[0..2]	[243..21]
gi\|114675243 - gi\|114675243\|ref\|XP_001149960.1\| PREDICTED: similar to Zinc finger protein 699 [Pan troglodytes]	267.0	[0..3]	[236..384]
gi\|109019665 - gi\|109019665\|ref\|XP_001102551.1\| PREDICTED: similar to olfactory receptor 30 [Macaca mulatta]	267.0	[0..2]	[244..112]
gi\|76623127 - gi\|76623127\|ref\|XP_591675.2\| PREDICTED: similar to olfactory receptor 853 [Bos taurus]	246.0	[0..2]	[245..128]
gi\|162319174 - gi\|162319174\|gb\|AAI56662.1\| Olfactory receptor 366 [synthetic construct] gi\|53933206, gi\|... - gi\|53933206\|ref\|NP_001005569.1\| olfactory receptor 366 [Mus musculus], gi\|32047847\|gb\|AAP70897.1\| ol...	237.0	[0..4]	[243..23]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVASVLLAL FMLFLSIVTV IGNLAVLLSY YLDKNIRQPT NYFIFSLAIS DLLIGLEGIP  60
   61 VYTAFYLNNN EWIWGDVLCD LWLSIDYIVC LASIYTVLGI TVDRYYSVKK PATYRNWRTP 120
  121 GRVVLIIIFI WLVPSILFSV SIFGYGTFTG TGRILKETEC YVQFMTNPYL NMGMYISYYW 180
  181 TTLFVMLYLY WGIYRAAKKL ALKSDQKTKR LALLTEMRRP EVSVRTSDAG NSSSDSPNDT 240
  241 SNSSK

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Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits