YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01870
Organism:	Caenorhabditis elegans
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01870.

Description	E-value	Query Range	Subject Range
gi\|20807038 - gi\|20807038\|ref\|NP_622209.1\| Acetyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20807038, gi\|... - gi\|20807038\|ref\|NP_622209.1\| acetyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515525\|g...	123.0	[0..4]	[149..2]
gi\|167039151, gi... - gi\|167039151\|ref\|YP_001662136.1\| ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter sp.... gi\|76797381, gi\|... - gi\|76797381\|ref\|ZP_00779704.1\| Ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter ethan... gi\|241884906, gi... - gi\|241902652\|ref\|ZP_04787384.1\| ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter broc... gi\|242230040, gi... - gi\|242258437\|ref\|ZP_04803241.1\| ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter sp. ...	119.0	[0..4]	[149..1]
gi\|146295284, gi... - gi\|82500547\|ref\|ZP_00885956.1\| Ribosomal-protein-alanine acetyltransferase [Caldicellulosiruptor sac...	113.0	[0..7]	[155..6]
gi\|42779362, gi\|... - gi\|42779362\|ref\|NP_976609.1\| ribosomal-protein-alanine acetyltransferase [Bacillus cereus ATCC 10987...	112.0	[0..4]	[149..1]
gi\|206743479, gi... - gi\|206978311\|ref\|ZP_03239187.1\| ribosomal-protein-alanine acetyltransferase [Bacillus cereus H3081.9... gi\|217957819, gi... - gi\|217957819\|ref\|YP_002336363.1\| ribosomal-protein-alanine acetyltransferase [Bacillus cereus AH187]... gi\|229137089, gi... - gi\|229137089\|ref\|ZP_04265712.1\| Ribosomal-protein-alanine acetyltransferase [Bacillus cereus BDRD-ST... gi\|49330672, gi\|... - gi\|49479116\|ref\|YP_034586.1\| ribosomal-protein-alanine N-acetyltransferase [Bacillus thuringiensis s... gi\|47555901, gi\|... - gi\|47567499\|ref\|ZP_00238211.1\| ribosomal-protein-alanine acetyltransferase [Bacillus cereus G9241], ... gi\|218901452, gi... - gi\|218901452\|ref\|YP_002449286.1\| ribosomal-protein-alanine acetyltransferase [Bacillus cereus AH820]... gi\|222094019, gi... - gi\|222094019\|ref\|YP_002528071.1\| ribosomal-protein-alanine N-acetyltransferase [Bacillus cereus Q1],... gi\|229089383, gi... - gi\|229089383\|ref\|ZP_04220657.1\| Ribosomal-protein-alanine acetyltransferase [Bacillus cereus Rock3-4...	112.0	[0..4]	[149..1]
gi\|52144979, gi\|... - gi\|52144979\|ref\|YP_081848.1\| ribosomal-protein-alanine N-acetyltransferase [Bacillus cereus E33L], g...	112.0	[0..4]	[149..1]
gi\|62290525, gi\|... - gi\|62290525\|ref\|YP_222318.1\| acetyltransferase [Brucella abortus bv. 1 str. 9-941], gi\|62196657\|gb\|A... gi\|82700441 - gi\|82700441\|ref\|YP_415015.1\| GCN5-related N-acetyltransferase [Brucella melitensis biovar Abortus 23... gi\|82616542 - gi\|82616542\|emb\|CAJ11620.1\| GCN5-related N-acetyltransferase [Brucella melitensis biovar Abortus 230... gi\|254689823 - gi\|254689823\|ref\|ZP_05153077.1\| GCN5-related N-acetyltransferase [Brucella abortus bv. 6 str. 870] gi\|254697971 - gi\|254697971\|ref\|ZP_05159799.1\| GCN5-related N-acetyltransferase [Brucella abortus bv. 2 str. 86/8/5... gi\|254730857 - gi\|254730857\|ref\|ZP_05189435.1\| GCN5-related N-acetyltransferase [Brucella abortus bv. 4 str. 292]	111.0	[0..4]	[155..1]
gi\|25286364 - pir\|\|AE3299 phosphinothricin N-acetyltransferase (EC 2.3.1.-) [imported] - Brucella melitensis (stra... gi\|17986662, gi\|... - gi\|17986662\|ref\|NP_539296.1\| phosphinothricin N-acetyltransferase [Brucella melitensis 16M], gi\|1798...	111.0	[0..4]	[155..1]
gi\|120323811, gi... - gi\|77954086\|ref\|ZP_00818487.1\| Ribosomal-protein-alanine acetyltransferase [Marinobacter aquaeolei V...	110.0	[0..1]	[196..1]
gi\|7480085 - pir\|\|T36751 hypothetical protein SCI11.18 - Streptomyces coelicolor gi\|5531439, gi\|2... - gi\|5531439\|emb\|CAB50944.1\| hypothetical protein [Streptomyces coelicolor A3(2)], gi\|21220223\|ref\|NP_...	110.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDLFFVTLY DRQDLLKESM TFLNSEWPRS DGSREHSQKK SCRQSPPMSF LLLNKENDEI  60
   61 LGHSRITHLP NRDHALWIES VMIKKDQRGL GLGKFLMKST EKWMTEKGFN EAYLSTDDQC 120
  121 RFYESLGYEK CDPIVHSTTA TCIFPAMNHF QNAAASNPSF LSKIAQPSAS STVSASAPPP 180
  181 PPPPPMAPKM VTRSTSPIVD VNTIDHQYMR KWLKPTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1yr0A
Description:	Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.44927632341056	bayes_pls_golite062009
transferase activity	1.29638283412179	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.25574147031095	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.14025367092848	bayes_pls_golite062009
acyltransferase activity	1.11249291357784	bayes_pls_golite062009
N-acyltransferase activity	0.756613127653639	bayes_pls_golite062009
acetyltransferase activity	0.71069229070011	bayes_pls_golite062009
N-acetyltransferase activity	0.4223042426612	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: