YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01848
Organism:	Caenorhabditis elegans
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01848.

Description	E-value	Query Range	Subject Range
gi\|77954187, gi\|... - gi\|77954187\|ref\|ZP_00818586.1\| thiol:disulfide interchange protein DsbE, putative [Marinobacter aqua...	138.0	[0..4]	[138..30]
gi\|89158835, gi\|... - gi\|89211558\|ref\|ZP_01189917.1\| thiol:disulfide interchange protein (thioredoxin) [Halothermothrix or...	137.0	[0..3]	[136..43]
gi\|47575097 - gi\|47575097\|ref\|ZP_00245132.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Rubrivivax gelat... gi\|124266414, gi... - gi\|124266414\|ref\|YP_001020418.1\| peroxiredoxin-like protein [Methylibium petroleiphilum PM1], gi\|124...	134.0	[0..2]	[139..36]
gi\|222449818, gi... - gi\|222525939\|ref\|YP_002570410.1\| alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal alle... gi\|53798443 - ref\|ZP_00358923.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Chloroflexus aurantiacus] gi\|76163376, gi\|... - gi\|76261742\|ref\|ZP_00769340.1\| Thioredoxin-related [Chloroflexus aurantiacus J-10-fl], gi\|76163376\|g...	132.0	[0..3]	[140..42]
gi\|56420614, gi\|... - gi\|56420614\|ref\|YP_147932.1\| thiol:disulfide interchange protein (thioredoxin) [Geobacillus kaustoph...	132.0	[0..4]	[123..45]
gi\|55773110, gi\|... - gi\|55981697\|ref\|YP_144994.1\| hypothetical protein TTHA1728 [Thermus thermophilus HB8], gi\|55773110\|d...	131.0	[0..4]	[139..39]
gi\|42782682, gi\|... - gi\|42782682\|ref\|NP_979929.1\| ahpC/TSA family protein [Bacillus cereus ATCC 10987], gi\|42738608\|gb\|AA...	130.0	[0..4]	[139..56]
gi\|254759241 - gi\|254759241\|ref\|ZP_05211267.1\| ahpC/TSA family protein [Bacillus anthracis str. Australia 94] gi\|254752969 - gi\|254752969\|ref\|ZP_05205005.1\| ahpC/TSA family protein [Bacillus anthracis str. Vollum] gi\|254744790 - gi\|254744790\|ref\|ZP_05202468.1\| ahpC/TSA family protein [Bacillus anthracis str. Kruger B] gi\|195993164, gi... - gi\|196034090\|ref\|ZP_03101500.1\| ahpC/TSA family protein [Bacillus cereus W], gi\|195993164\|gb\|EDX5712... gi\|254738652 - gi\|254738652\|ref\|ZP_05196355.1\| ahpC/TSA family protein [Bacillus anthracis str. Western North Ameri... gi\|218538154, gi... - gi\|218904740\|ref\|YP_002452574.1\| ahpC/TSA family protein [Bacillus cereus AH820], gi\|218538154\|gb\|AC... gi\|254726055 - gi\|254726055\|ref\|ZP_05187837.1\| ahpC/TSA family protein [Bacillus anthracis str. A1055] gi\|254686179 - gi\|254686179\|ref\|ZP_05150038.1\| ahpC/TSA family protein [Bacillus anthracis str. CNEVA-9066] gi\|229603030, gi... - gi\|229603030\|ref\|YP_002867804.1\| ahpC/TSA family protein [Bacillus anthracis str. A0248], gi\|2292674... gi\|228660422, gi... - gi\|229123128\|ref\|ZP_04252335.1\| AhpC/TSA [Bacillus cereus 95/8201], gi\|228660422\|gb\|EEL16055.1\| AhpC... gi\|228947226, gi... - gi\|228947226\|ref\|ZP_04109520.1\| AhpC/TSA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1], gi\|22... gi\|228928663, gi... - gi\|228928663\|ref\|ZP_04091699.1\| AhpC/TSA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1],... gi\|227006047, gi... - gi\|227813556\|ref\|YP_002813565.1\| ahpC/TSA family protein [Bacillus anthracis str. CDC 684], gi\|22700... gi\|49330522, gi\|... - gi\|49478966\|ref\|YP_037689.1\| AhpC/TSA family protein [Bacillus thuringiensis serovar konkukian str. ... gi\|164713266, gi... - gi\|165871055\|ref\|ZP_02215706.1\| ahpC/TSA family protein [Bacillus anthracis str. A0488], gi\|16471326... gi\|49186409, gi\|... - gi\|49186409\|ref\|YP_029661.1\| ahpC/TSA family protein [Bacillus anthracis str. Sterne], gi\|49180336\|g... gi\|167636457, gi... - gi\|167636457\|ref\|ZP_02394755.1\| ahpC/TSA family protein [Bacillus anthracis str. A0442], gi\|16752811... gi\|47504107, gi\|... - gi\|47528959\|ref\|YP_020308.1\| ahpC/TSA family protein [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|167640617, gi... - gi\|167640617\|ref\|ZP_02398879.1\| ahpC/TSA family protein [Bacillus anthracis str. A0193], gi\|16751148... gi\|170688419, gi... - gi\|170688419\|ref\|ZP_02879627.1\| ahpC/TSA family protein [Bacillus anthracis str. A0465], gi\|17066758... gi\|170708157, gi... - gi\|170708157\|ref\|ZP_02898604.1\| ahpC/TSA family protein [Bacillus anthracis str. A0389], gi\|17012696... gi\|177652491, gi... - gi\|177652491\|ref\|ZP_02934958.1\| ahpC/TSA family protein [Bacillus anthracis str. A0174], gi\|17208216... gi\|190564522, gi... - gi\|190564522\|ref\|ZP_03017443.1\| ahpC/TSA family protein [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|30263560, gi\|... - gi\|30263560\|ref\|NP_845937.1\| ahpC/TSA family protein [Bacillus anthracis str. Ames], gi\|30258195\|gb\|... gi\|65320889, gi\|... - gi\|65320889\|ref\|ZP_00393848.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Bacillus anthrac...	129.0	[0..4]	[139..56]
gi\|51975396, gi\|... - gi\|52141927\|ref\|YP_084902.1\| AhpC/TSA family protein [Bacillus cereus E33L], gi\|51975396\|gb\|AAU16946...	129.0	[0..4]	[139..56]
gi\|47555373, gi\|... - gi\|47567895\|ref\|ZP_00238602.1\| thioredoxin family protein [Bacillus cereus G9241], gi\|47555373\|gb\|EA...	129.0	[0..4]	[139..56]

Back

Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLAGVKLE KRDKTLVDAT EALAGKAVGF YFSAHWCPPC RGFTPILKDF YEEVEDEFEV  60
   61 VFVSFDRSES DLKMYMSEHG DWYHIPYGND AIKELSTKYG VSGIPALIIV KPDGTEVTKD 120
  121 GRNDVQNGKD PKATVAKWKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	1o73A
Description:	Tryparedoxin I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits