YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-3
Organism:	Caenorhabditis elegans
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-3.

Description	E-value	Query Range	Subject Range
RS3_PONAB - 40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1 gi\|62897657 - gi\|62897657\|dbj\|BAD96768.1\| ribosomal protein S3 variant [Homo sapiens] RS3_PONPY - 40S ribosomal protein S3 - Pongo pygmaeus (Orangutan)	274.0	[0..6]	[245..4]
gi\|74222288 - gi\|74222288\|dbj\|BAE26946.1\| unnamed protein product [Mus musculus]	273.0	[0..6]	[245..4]
gi\|60652571 - gi\|60652571\|gb\|AAX28980.1\| ribosomal protein S3 [synthetic construct]	273.0	[0..6]	[245..4]
gi\|70850 - gi\|70850\|pir\|\|R3RT3 ribosomal protein S3, cytosolic [validated] - rat	272.0	[0..6]	[245..4]
RPS3 - ribosomal protein S3 gi\|208967330, gi... - gi\|208967330\|dbj\|BAG73679.1\| ribosomal protein S3 [synthetic construct], gi\|123999104\|gb\|ABM87135.1\|... RS3_BOVIN - 40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1 CCDS8236.1_1 - null gi\|223973891 - gi\|223973891\|gb\|ACN31133.1\| unknown [Zea mays] gi\|109107963 - gi\|109107963\|ref\|XP_001086020.1\| PREDICTED: similar to ribosomal protein S3 [Macaca mulatta] gi\|187609257 - gi\|187609257\|pdb\|2ZKQ\|CC Chain c, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Compl... RS3_PIG - 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=1 SV=1	272.0	[0..6]	[245..4]
gi\|37595356 - gi\|37595356\|gb\|AAQ94564.1\| ribosomal protein S3 [Danio rerio]	271.0	[0..6]	[245..4]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANQNVTKK KKAVIGGIFK AELNNFLMKE LAEDGYSGVE VRSTPARAEV IIMATRTQNV  60
   61 LGERGRRIKE LTSVVQKRFG FEEGSVELYA EKVSNRGLCA VAQCESLRYK LVGGLAVRRA 120
  121 CYGVLRFIME SGAQGVEVIV SGKLRGQRAK AMKFVDGLMI HSGHPVNDYI QQAVRHVQLR 180
  181 QGVIGIKVKI MLPYDPRGQN GPRNALPDHV QIVEPQEEVL PKEPHSQHKE EKKDVQVPAA 240
  241 QPVAPVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.221849
Match:	1s1hC
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits