YRC Public Data Repository - Protein Structure Prediction

Protein:	dct-1
Organism:	Caenorhabditis elegans
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dct-1.

Description	E-value	Query Range	Subject Range
CE47388 - WBGene00015776 locus:dct-1 NIP3 homolog status:Confirmed UniProt:Q09969 protein_id:CCD63843.2	417.0	[0..1]	[210..12]
gi\|157770732 - gi\|157770732\|ref\|XP_001677186.1\| Hypothetical protein CBG16854 [Caenorhabditis briggsae AF16] gi\|39594215, gi\|... - gi\|39594215\|emb\|CAE70325.1\| Hypothetical protein CBG16854 [Caenorhabditis briggsae], gi\|187026242\|em...	351.0	[0..30]	[209..25]
gi\|57906326, gi\|... - gi\|57906326\|ref\|XP_551422.1\| ENSANGP00000025995 [Anopheles gambiae str. PEST], gi\|55233936\|gb\|EAL386...	65.0	[0..28]	[197..52]
gi\|66525291 - gi\|66525291\|ref\|XP_393165.2\| PREDICTED: similar to CG5059-PA, isoform A isoform 1 [Apis mellifera]	59.0	[0..52]	[203..9]
gi\|157114097, gi... - gi\|157114097\|ref\|XP_001657980.1\| hypothetical protein AaeL_AAEL006711 [Aedes aegypti], gi\|108877450\|...	58.0	[0..21]	[197..33]
gi\|47222304 - gi\|47222304\|emb\|CAG05053.1\| unnamed protein product [Tetraodon nigroviridis]	54.0	[0..122]	[208..106]
gi\|59862066, gi\|... - gi\|62751435\|ref\|NP_001015859.1\| BCL2/adenovirus E1B 19kDa interacting protein 3 [Xenopus (Silurana) ...	52.0	[0..122]	[140..120]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDIKRKINF ASGEKTDESV QPQQQTEQSS AQQTTPSAKA VSNPFITPLT ESTPGMSESW  60
   61 VELAPSRTSL CSSVDINMVI IDEKDKDSRL SPVSIAQSPH VEFESLEQVK YKLVREMLPP 120
  121 GKNTDWIWDW SSRPENTPPK TVRMVQYGSN LTTPPNSPEP ELYQYLPCES DSLFNVRVVF 180
  181 GFLVTNIFSF VVGAAVGFAV CRKLIKHHRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits