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View Structure Prediction Details

Protein: CE01778
Organism: Caenorhabditis elegans
Length: 515 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01778.

Description E-value Query
Range
Subject
Range
COPD_RAT - Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1
405.0 [0..1] [515..1]

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Predicted Domain #1
Region A:
Residues: [1-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLIAACILS KTGKLLVARQ FVNDMMRSRL EGLVDAFPKL IGNEKEAATR QHTFVETDSV  60
   61 RYVYHPLDNI YLVLVTTKNS NILEDLETLR LFVRVIPEYC RSNEEKEILA HDFDLIFAFD 120
  121 EVVTLGYRES VNLAQIRTFT EMDSHEERVF MQIKEAQEKA AKQAMAEKAK ELKRAQKEAL 180
  181 SRGLKPSYQS STGISSSSTP NAAAVSEPAA PRPSAPKGPI GGGKALKLGG KTNNEDDFLD 240
  241 TLRQQGQSIA PVQKASLSGG VSSLAAPIST APRVKREVVH VRTEEKINTR VSRDGGLESG 300
  301 EVQATVTLSI GSPEFIPISI KMNNGSAAGT QLQVHPNLDK KEWQSSSTLK IKPNGKPYPV 360
  361 NSDVGILKWK MALSEEEQLP ISFNCWPQES SDGVQVNIEY TLQREDITLN NVRIIVPLPT 420
  421 ATAPSVGECD GEYEYHKTKN VIVWSLAVID SSNSSGTLEF SVPNGHCDHF FPVSVGFTSE 480
  481 NLFVPITVQK VVKNDGSPVT YSVETTFNSE NFEIV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 98.0
Match: 1w63M
Description: AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle