YRC Public Data Repository - Protein Structure Prediction

Protein:	nlt-1
Organism:	Caenorhabditis elegans
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nlt-1.

Description	E-value	Query Range	Subject Range
NLTP_BOVIN - Non-specific lipid-transfer protein OS=Bos taurus GN=SCP2 PE=1 SV=2	144.0	[0..3]	[118..427]
NLTP_CHICK - Non-specific lipid-transfer protein (Fragment) OS=Gallus gallus GN=SCP2 PE=2 SV=1	144.0	[0..3]	[118..431]
gi\|148230406, gi... - gi\|52221144\|gb\|AAH82655.1\| LOC494715 protein [Xenopus laevis], gi\|148230406\|ref\|NP_001088024.1\| hypo...	137.0	[0..3]	[118..420]
gi\|47215955 - gi\|47215955\|emb\|CAF96357.1\| unnamed protein product [Tetraodon nigroviridis]	136.0	[0..2]	[118..424]
gi\|122890567, gi... - gi\|41053664\|ref\|NP_957159.1\| sterol carrier protein 2 [Danio rerio], gi\|38969931\|gb\|AAH63230.1\| Ster...	135.0	[0..3]	[118..422]
gi\|126352659, gi... - gi\|45775304\|gb\|AAS77255.1\| 17 beta-hydroxysteroid dehydrogenase type 4 [Equus caballus], gi\|12635265...	132.0	[0..3]	[118..621]
gi\|1620451 - gi\|1620451\|emb\|CAA64427.1\| multifunctional protein 2 [Rattus norvegicus]	132.0	[0..2]	[118..619]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKSDVIFE EIKERIATDK EMVKKVGTSF RMTIAGADGK TKVWTIDAKS DTPYVGDDSS  60
   61 RPVEIEINIK DSDFIAIAAG KMKPDQAFMQ GKMKLKGNIA KAMKLRTILD PKMLKAKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1iktA
Description:	SCP2-like domain of MFE-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
sterol carrier protein X-related thiolase activity	0.757548542700829	bayes_pls_golite062009
binding	0.435013873390091	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: