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View Structure Prediction Details

Protein: lin-52
Organism: Caenorhabditis elegans
Length: 161 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-52.

Description E-value Query
Range
Subject
Range
gi|157774365 - gi|157774365|ref|XP_001665248.1| hypothetical protein CBG09984 [Caenorhabditis briggsae AF16]
gi|187031441, gi... - gi|39590747|emb|CAE65119.1| Hypothetical protein CBG09984 [Caenorhabditis briggsae], gi|187031441|em...
284.0 [0..1] [151..1]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPLGFIGY EFGDDEMFVQ QMIEKKSNAE QAKMLEQQKK MLECTETMPE ESEPVPMKCL  60
   61 DFEEAFQSES VSKGYESPYK NISFLKEDAV TVNTMSHCPA DDIAKLIRNI QNSVYTLGIE 120
  121 EARQCRRGKL LNVLKPTGSA SPRYLQPTPP KNVAEETTGS Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle