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View Structure Prediction Details

Protein: CE01673
Organism: Caenorhabditis elegans
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01673.

Description E-value Query
Range
Subject
Range
gi|47229253 - gi|47229253|emb|CAG04005.1| unnamed protein product [Tetraodon nigroviridis]
262.0 [0..36] [356..1]

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Predicted Domain #1
Region A:
Residues: [1-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVKDQEVM LLISDRLLQG GKYNFKNIFR KDDRDFKTRK VIIVLVICLI FIITDLFIIR  60
   61 SHLHQISSRN QDTNSISALL NKQGVTFVKG MSSLKYKIFA FAQLNTNGSL QFESAISKQK 120
  121 FLNLNRKSKH INNNVNRILS IGGTNYSEKL SIMLQDLKKT RRFIMSIIRF LKDNELDGVE 180
  181 LLWNRNTEET LYCELLQHLK MGLEKQEKQY SISLRVPQTG IGKWHIGCEL EDQENADSIN 240
  241 LISMAEYENQ LFGSGGVIRI SEAFNTAWEM KYHACNSNQS SKFNLVIPTI EQTEQIDMQY 300
  301 VWNPEKKEIQ RFNSSTKTEY TKLQMGGVSI WSRDMDYHNN IQLDSYFFER ICSQELGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.221849
Match: 1hjvA
Description: Chitinase-3 like protein 1 (GP-39, YKL-40)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.00445818053203 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle