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View Structure Prediction Details

Protein: CE01569
Organism: Caenorhabditis elegans
Length: 359 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01569.

Description E-value Query
Range
Subject
Range
gi|187038706, gi... - gi|39589118|emb|CAE57851.1| Hypothetical protein CBG00888 [Caenorhabditis briggsae], gi|187038706|em...
gi|157749055 - gi|157749055|ref|XP_001678241.1| Hypothetical protein CBG00888 [Caenorhabditis briggsae AF16]
260.0 [0..1] [359..1]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSISKTKSG ERYRAPTDQA RKMDRKKENK RNKKDRQQIR QAMAKYCNLD ETTSKLLALE  60
   61 RQILGLDPQP FHIDVLRKKQ KVLTDSINKR RMTLQQGKED AELKKFNDKI NA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YQSDCQKLAV LAQQARLARE ADPDMIPLPM GDVSTAGPER NNQLLAPAMI KRKVEFQLPP  60
   61 RPVRVAGQKP PGPPCGLAPN FSDSEEEEEE VHDDHYDDID LAPVPIPEFD NPYQPIHRNY 120
  121 GPPSSYNSMP TRMPHHHHHH HPHASSHYNP MGFQNHHEEA VISSAPQINR SNEPAAPATL 180
  181 SAAPELRNLR RETVKLVPAQ LLRRPGDNKT IVPRQAAPVQ RRPEVQKQAK NTDEAYNDFM 240
  241 KELDGLI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle