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View Structure Prediction Details

Protein: CE01562
Organism: Caenorhabditis elegans
Length: 401 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01562.

Description E-value Query
Range
Subject
Range
gi|109085733 - gi|109085733|ref|XP_001098342.1| PREDICTED: similar to N-acylsphingosine amidohydrolase (acid cerami...
447.0 [0..7] [401..6]

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Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPVAISLSL LLLVTLLPGS EQRKVDNPDF QPNCLVGGPD IYDPAQSEKV LWFDVNLDLP  60
   61 PRQRFQQIAK AYKKEIHAVF DVLNYFLTII PGVNAWELIG NMTASALDKG MIMNPYRDEV 120
  121 LGIAEVLDVP LGNLVFLNLF YEMSRF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [147-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CTSIVAQTED NKDLYHARNL DFGQLFVWDI AAQSWGLTEA LKKVSVNINF FKNGKLLFKG  60
   61 STLAGHVGVL TAMKPHKFSL SMNAKVQPDI INVAKWYMGA YENTDLQFVM YFDRWLFENC 120
  121 DDFQCAREKI AGVKLLTGAY FILGGANPGE GSVLVRNTTS VQFERKLFDG ANDWFLLQTN 180
  181 YDPDKDPLFI DNRRDPGNAC MNKLTRANVG MKGIFTVLSS KPNLNKTTVH TVIMSVTKGY 240
  241 FETFIQKCPN PCWAF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.045757
Match: 2bjfA
Description: Crystal Structure of Conjugated Bile Acid Hydrolase from Clostridium perfringens in Complex with Reaction Products Taurine and Deoxycholate
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle