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View Structure Prediction Details

Protein: CE01509
Organism: Caenorhabditis elegans
Length: 472 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01509.

Description E-value Query
Range
Subject
Range
CE20269 - WBGene00012952 status:Predicted TR:Q9XWD9 protein_id:CAA21736.1
290.0 [0..7] [452..1]

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Predicted Domain #1
Region A:
Residues: [1-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPLRMTTP LGVSLSSDLK RALQDNEKLT RDVSDAKLLK EDAEIKLKKI RNKLNGEHSE  60
   61 KLGKLNDKYK AVQEELKTMK QSSQLKREKG VLETENRRLE TAKSELDRQL LGKNDELRMA 120
  121 DVEKVEDVKM IRDLKAGKRP PFKTEFKNLI SRSEKFRRIE IARAELQRCG GEASEFYCLL 180
  181 LGRLSKLGLL KWKMSKREGL YLYHASNLTR RRFTKLKQML RGSGCIDPLP SIHEIKKLEK 240
  241 VVGSSDQLKV TEHTVDGKSV VAVHLLDVVK MLTERINELV ANGKMVVGDD PIWLTILGDK 300
  301 GSEEFKLCLS IGNVSQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [318-472]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSCFHLIPLG IFNDDESSEN IRKYLGPIVE QLNRLLFLKI KVGDKDIDVP VEQYLGGDMK  60
   61 FQCDAIGHEG GNSTYQCMQC FSLRGQSISR SMQLKRGDIK KTRISKAVVN DRAEKLEELE 120
  121 EFLSGTKCAL QIVQNFKNRQ VNGYKSPSEP CRAAM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle