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View Structure Prediction Details

Protein: wht-3
Organism: Caenorhabditis elegans
Length: 610 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wht-3.

Description E-value Query
Range
Subject
Range
gi|66850438, gi|... - gi|70996096|ref|XP_752803.1| ABC transporter [Aspergillus fumigatus Af293], gi|66850438|gb|EAL90765....
gi|159131557 - gi|159131557|gb|EDP56670.1| ABC transporter, putative [Aspergillus fumigatus A1163]
gi|44890030 - gi|44890030|emb|CAF32148.1| ABC transporter, putative [Aspergillus fumigatus]
458.0 [0..9] [610..827]

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Predicted Domain #1
Region A:
Residues: [1-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFDLLAERK RWNAGYESID TSSQKLTEVV TPITVTWENI EVKTRKKLFS KKQKQLLNRV  60
   61 SGIAKPGEMV ALMGASGAGK TTLMNVLMCR NMKGLEKNGT VKVNGTKIGK EISLISGFAQ 120
  121 QQEIFIPTLT VDEYLMIQAR LRMKANKHTR RERVDEIIEM LRLQNCRDLK IGTPGLVKGI 180
  181 SGGEARRLTF ACELLSNPSL LFADEPTSGL DSFMAASVVQ ILKNLANSGR TLIHQPTAEL 240
  241 FFQFDKIIFL SMGKTAFMGT PHESVKFFAD CGHPIPKLFN PPEWIQSKLS VIPNNETKSR 300
  301 ETIGKIIEFY EKSIIHQKSI VEIRVIATTE LPPYIENPGF FAETGALLKR ACLDVIRSPA 360
  361 QMRMKLIQKV VMGLFIGSLY WQQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.154902
Match: 2d62A
Description: No description for 2d62A was found.

Predicted Domain #2
Region A:
Residues: [385-610]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDPRGVRNTN SALYFLIAEL TFSTMFGIMT FMEHELPLIA REYHDGLFYV ISYYISRFLS  60
   61 YLPLFTIDGA LMIVISYWMI GLNSTWQQVA KSILISVLVE QSATSCGLFL ACLFETTSLA 120
  121 IAFAVPASGL FALLSGLYGN TNNFPVYIRW MQWTSWCRYG FEGLVVNQWS QVDNPKWDPF 180
  181 YRELILKQFS FNKDNYQLDV IGLCSIVIFF YLAGYIALFI RIRLSR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.619789
Match: PF01061.15
Description: No description for PF01061.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle