YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE01446
Organism: Caenorhabditis elegans
Length: 645 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01446.

Description E-value Query
Range
Subject
Range
LEPA_BACHD - Elongation factor 4 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /...
LEPA_BACHD - Elongation factor 4 OS=Bacillus halodurans GN=lepA PE=3 SV=1
606.0 [0..39] [644..10]

Back

Predicted Domain #1
Region A:
Residues: [1-645]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRRRLLKLL FIGKLRVSCK HYSTAGDPTK LVNLSEFTPD KIRNFGIVAH VDHGKSTLAD  60
   61 RLLEMCGAVP PGQKQMLDKL QVERERGITV KAQTAALRHR GYLLNLIDTP GHVDFSAEVS 120
  121 RSLAVCDGIL LLVAANQGVQ AQTIANFWLA FEKNIQIIPV INKIDLPGAD IKSVETQLKN 180
  181 LFEFNPEECL HISAKSGLNV DKVLEAIIDR VPAPTAIIDA PFRSMIFDSY FDHFRGAIAH 240
  241 IMVKEGSVKK GDKIQSYQNE KVYDVSEVGV MRPEMVKCTE LRAGQVGYLV CNMRTVNEAV 300
  301 VGETLFAETT SRDSVKTFAE IKGVKPTVYA GLFPVETSDY ESLKQAVERL CLNDPSVTVI 360
  361 PDSSKALGLG WRIGFLGVLH MEVFGARLSQ EYDASVILCQ PSVEYRAKIK DNETIRKKRY 420
  421 DGMEEIRILD PSKFPDESDV DSFLEPMVKV RMIVPNEMMG TVNGLCSECR GERGEITSID 480
  481 STRLVILWRL PLAEVAVDFF ERLKKLTSGY ASFDYEPDGW QDTRLVKLTI LINSKEVSEF 540
  541 SQIIPAAMAR DRAKILVQRL KREIPRQQFE VTIKACIGSS TKALSQIVIQ PMKRDFSQLL 600
  601 KGNFGGGGME RLNKKLSHQK KGKERMKMVG NVQIPKEAFL NVLKR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.69897
Match: 1fnmA
Description: Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle