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View Structure Prediction Details

Protein: CE01426
Organism: Caenorhabditis elegans
Length: 483 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01426.

Description E-value Query
Range
Subject
Range
gi|73958771 - gi|73958771|ref|XP_850881.1| PREDICTED: similar to DNA-directed RNA polymerases III 80 kDa polypepti...
618.0 [0..8] [482..201]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVDGASDDE QEQIIRKLVK KPEFLSDEED DSVEDQVVWE CDVVVCNSTP NTEMFSVSYP  60
   61 SSKRDAWDAK RFPIARYKKN VRLLEMRFMT DTQLGSYDKK KAELMYMDGD VPKKGHGIDA 120
  121 LRANDEIYEG RAF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [134-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IHDHPIVNAI GFFKNGEFFI HPLTGAFEMH RSIQGLNKKK KSDGKSGKSD EDSSGEEEDV  60
   61 KPSSAAVRVK FSRPETERQK KRREASALHR EKKIASDMWI PMKVHLKDGD PVAEKIDGIS 120
  121 Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [255-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGLLLDDPEA SRMSIRALVN RAIICGVKEE LVIESGKEHM LSKQRIDDLP DPNLQLKAHM  60
   61 VKSHVMKTSE MRRLIDPSAM STDKMIAKLK ECASLVQGVW VLDSNLMFKN LAPAHSNTAG 120
  121 K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [376-483]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDLYRAELWR NARDLALCLI DGGHRVTRLT LMTCFKLSER DSDEILSTFG VKCEATRSWR  60
   61 LRVERDAQFL EDPAMKKHVV EQKAKWVQKF NELEKSLQES PAKSPKKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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