YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01413
Organism:	Caenorhabditis elegans
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01413.

Description	E-value	Query Range	Subject Range
gi\|39582001, gi\|... - gi\|39582001\|emb\|CAE64432.1\| Hypothetical protein CBG09135 [Caenorhabditis briggsae], gi\|187032050\|em... gi\|157776219 - gi\|157776219\|ref\|XP_001666175.1\| hypothetical protein CBG09135 [Caenorhabditis briggsae AF16]	358.0	[0..4]	[238..5]
gi\|125550266, gi... - gi\|90399070\|emb\|CAJ86292.1\| H0124B04.9 [Oryza sativa (indica cultivar-group)], gi\|125550266\|gb\|EAY96...	235.0	[0..43]	[229..47]
CPIN1_MOUSE - Anamorsin OS=Mus musculus GN=Ciapin1 PE=1 SV=1	233.0	[0..51]	[234..127]
CPIN1_RAT - Anamorsin OS=Rattus norvegicus GN=Ciapin1 PE=1 SV=1	224.0	[0..51]	[234..127]
gi\|73950355 - gi\|73950355\|ref\|XP_535285.2\| PREDICTED: similar to Anamorsin (Cytokine induced apoptosis inhibitor 1...	224.0	[0..51]	[236..130]
gi\|62901892 - gi\|62901892\|gb\|AAY18897.1\| unknown [synthetic construct]	220.0	[0..51]	[234..151]
gi\|111304910 - gi\|111304910\|gb\|AAI20106.1\| CIAPIN1 protein [Bos taurus]	220.0	[0..51]	[234..128]
gi\|190691635, gi... - gi\|190691635\|gb\|ACE87592.1\| cytokine induced apoptosis inhibitor 1 protein [synthetic construct], gi... CIAPIN1 - cytokine induced apoptosis inhibitor 1	219.0	[0..51]	[234..127]
DRE21_ORYSJ - Anamorsin homolog 1 OS=Oryza sativa subsp. japonica GN=Os04g0674400 PE=2 SV=2	219.0	[0..43]	[235..48]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILSDFLKH PNLLQVTDGG PLVDGTNGVK GTRVVGSVSN ARELRGADSL VGDVERAIIQ  60
   61 VQETELLAEV CNTVFDVMKQ NGEVIVFSQD LTTAQRKLRI AGFRVTEVAA EFPVRGIK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [119-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVNFGEKVAL DLGVVADEDL IDEDGLLQEE DFEKPTGDQL KAGGCGPDDP NKKKRACKNC  60
   61 SCGLAEQEEL EKMGQIAAEP KSSCGNCSLG DAFRCSTCPY LGQPPFKPGE TVKISTVDDF 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits