YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01346
Organism:	Caenorhabditis elegans
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01346.

Description	E-value	Query Range	Subject Range
gi\|39579724, gi\|... - gi\|39579724\|emb\|CAE56474.1\| Hypothetical protein CBG24188 [Caenorhabditis briggsae], gi\|187040395\|em... gi\|157772553 - gi\|157772553\|ref\|XP_001664341.1\| hypothetical protein CBG24188 [Caenorhabditis briggsae AF16]	322.0	[0..1]	[201..1]
MIC27_MOUSE - MICOS complex subunit Mic27 OS=Mus musculus GN=Apool PE=1 SV=1	245.0	[0..28]	[201..17]
gi\|55562779, gi\|... - gi\|62078943\|ref\|NP_001014127.1\| apolipoprotein O-like [Rattus norvegicus], gi\|55562779\|gb\|AAH86434.1...	234.0	[0..28]	[201..6]
APOOL - apolipoprotein O-like	222.0	[0..31]	[201..22]
APOOL_PONPY, CX0... - (Q5NVS6) Uncharacterized protein CXorf33 homolog precursor, Apolipoprotein O-like precursor - Pongo ... MIC27_PONAB - MICOS complex subunit MIC27 OS=Pongo abelii GN=APOOL PE=2 SV=1	220.0	[0..31]	[201..22]
gi\|114689299 - gi\|114689299\|ref\|XP_521156.2\| PREDICTED: similar to AAIR8193 isoform 2 [Pan troglodytes]	218.0	[0..31]	[201..22]
gi\|109131403 - gi\|109131403\|ref\|XP_001082461.1\| PREDICTED: similar to CG5903-PA [Macaca mulatta]	218.0	[0..11]	[201..14]
MIC27_BOVIN - MICOS complex subunit MIC27 OS=Bos taurus GN=APOL PE=2 SV=1	215.0	[0..31]	[201..22]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQDKPIVET ISNAGEQVTN VFGQFWQLVT SKNTTNNGDS KPIKIEQLPI YAEDNAPLKQ  60
   61 KFLPEEPLPL QREFATIRIA CEQEYDRVAE RFKVVDCAMT QTKKAATKCN AYLTEEW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TALPKAAAIT VGGMAGFVLG LKRGPVGRLL TTTIGLATMA AFCYPIEAVD VAKTGRAHAE  60
   61 QTWYSFQESP TPSAIVKTNL SPPK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits