YRC Public Data Repository - Protein Structure Prediction

Protein:	acbp-4
Organism:	Caenorhabditis elegans
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acbp-4.

Description	E-value	Query Range	Subject Range
gi\|157749917, gi... - gi\|157777392\|ref\|XP_001666762.1\| hypothetical protein CBG15351 [Caenorhabditis briggsae AF16], gi\|15... gi\|39581399, gi\|... - gi\|39587157\|emb\|CAE57625.1\| Hypothetical protein CBG00608 [Caenorhabditis briggsae], gi\|39581399\|emb...	178.0	[0..1]	[146..1]
gi\|119606466, gi... - gi\|55958298\|emb\|CAI16915.1\| acyl-Coenzyme A binding domain containing 5 [Homo sapiens], gi\|203098629...	166.0	[0..6]	[141..44]
ACBD5_PONPY - Acyl-CoA-binding domain-containing protein 5 - Pongo pygmaeus (Orangutan) ACBD5_PONAB - Acyl-CoA-binding domain-containing protein 5 OS=Pongo abelii GN=ACBD5 PE=2 SV=1	164.0	[0..6]	[141..44]
gi\|109505315 - gi\|109505315\|ref\|XP_225630.4\| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5 [Rat...	164.0	[0..1]	[141..271]
gi\|31566352 - gi\|31566352\|gb\|AAH53518.1\| Acbd5 protein [Mus musculus]	161.0	[0..1]	[141..92]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSLDEQFE AAVWIINALP KNGPIKTSIN DQLQMYSLYK QATSGKCDTI QPYFFQIEQR  60
   61 MKWNAWNQLG NMDEAEAKAQ YVEKMLKLCN QAEAEHNLME FLSDPTIADL LPKQNQLREH 120
  121 FATLGRTTVK GFEGETVEIN GVSISF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2copA
Description:	Solution structure of RSGI RUH-040, an ACBP domain from human cDNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits