YRC Public Data Repository - Protein Structure Prediction

Protein:	tag-174
Organism:	Caenorhabditis elegans
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-174.

Description	E-value	Query Range	Subject Range
gi\|157777150 - gi\|157777150\|ref\|XP_001666641.1\| hypothetical protein CBG23006 [Caenorhabditis briggsae AF16] gi\|187021366, gi... - gi\|39587432\|emb\|CAE75086.1\| Hypothetical protein CBG23006 [Caenorhabditis briggsae], gi\|187021366\|em...	182.0	[0..1]	[128..1]
gi\|50756677 - gi\|50756677\|ref\|XP_415270.1\| PREDICTED: similar to cytochrome c oxidase subunit VIa [Gallus gallus]	145.0	[0..7]	[124..2]
gi\|108881257, gi... - gi\|94468508\|gb\|ABF18103.1\| cytochrome c oxidase subunit VIa/COX13 [Aedes aegypti], gi\|157135376\|ref\|...	143.0	[0..1]	[123..1]
gi\|85112355 - gi\|85112355\|ref\|XP_964326.1\| hypothetical protein NCU01962 [Neurospora crassa OR74A] gi\|32417348, gi\|... - gi\|32417348\|ref\|XP_329152.1\| predicted protein [Neurospora crassa], gi\|28926104\|gb\|EAA35090.1\| hypot...	143.0	[0..4]	[115..16]
gi\|13277855, gi\|... - gi\|74151378\|dbj\|BAE38808.1\| unnamed protein product [Mus musculus], gi\|6680988\|ref\|NP_031774.1\| cyto...	143.0	[0..2]	[124..10]
COX6A1 - cytochrome c oxidase subunit VIa polypeptide 1 gi\|123999658, gi... - gi\|123999658\|gb\|ABM87370.1\| cytochrome c oxidase subunit VIa polypeptide 1 [synthetic construct], gi... gi\|114647282 - gi\|114647282\|ref\|XP_001160455.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-...	141.0	[0..35]	[124..22]
gi\|46129425, gi\|... - gi\|46129425\|ref\|XP_389064.1\| hypothetical protein FG08888.1 [Gibberella zeae PH-1], gi\|42549219\|gb\|E...	141.0	[0..3]	[115..5]
gi\|73995307 - gi\|73995307\|ref\|XP_534704.2\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIa-liver, mitoc...	139.0	[0..35]	[124..23]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLAQPATR SVVKTFQRKS SGSFYGSNNV EGFKESYVTP LKQAHNASET WKKIFFIASI  60
   61 PCLALTMYAA FKDHKKHMSH ERPEHVEYAF LNVRNKPFPW SDGNHSLFHN KAEQFVPGVG 120
  121 FEADREKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1v54G
Description:	Bovine heart cytochrome c oxidase at the fully oxidized state
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits