YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01256
Organism:	Caenorhabditis elegans
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01256.

Description	E-value	Query Range	Subject Range
gi\|114581861, gi... - gi\|114581863\|ref\|XP_001152299.1\| PREDICTED: chimerin (chimaerin) 1 isoform 10 [Pan troglodytes], gi\|...	95.0	[0..17]	[131..294]
gi\|7488942, gi\|3... - pir\|\|T14909 bZIP DNA-binding protein - parsley, gi\|3336903\|emb\|CAA71768.1\| bZIP DNA-binding protein ...	93.0	[0..26]	[170..270]
FOS_TETFL - Proto-oncogene c-Fos OS=Tetraodon fluviatilis GN=fos PE=3 SV=1	93.0	[0..3]	[129..53]
gi\|157773305 - gi\|157773305\|ref\|XP_001664717.1\| hypothetical protein CBG09103 [Caenorhabditis briggsae AF16] gi\|39584987, gi\|... - gi\|39584987\|emb\|CAE64411.1\| Hypothetical protein CBG09103 [Caenorhabditis briggsae], gi\|187032109\|em...	92.0	[0..5]	[174..1]
gi\|13775109 - gi\|13775109\|gb\|AAK39131.1\|AF369791_1 bZIP transcription factor 3 [Phaseolus vulgaris]	92.0	[0..6]	[155..235]
gi\|2801478, gi\|9... - gi\|9626985\|ref\|NP_056890.1\| gag polyprotein [Murine osteosarcoma virus], gi\|2801478\|gb\|AAC82572.1\| p... gi\|332196 - gi\|332196\|gb\|AAA46573.1\| gag-fos fusion protein [FBR murine osteosarcoma virus]	92.0	[0..3]	[129..345]
FOS_TAKRU - Proto-oncogene c-Fos OS=Takifugu rubripes GN=fos PE=3 SV=1	91.0	[0..3]	[129..54]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTMQGAHY PQMAFDPTWQ MHPAYATATA FNPYNVSFDF TRSPNTSGGS DESMSDGSKI  60
   61 DPKRSPKYLE KRMKNNEAAK KSRASRKHRE QKNQTENELL KRKNAALEEE LKQAKCELAQ 120
  121 MQITIRDMSI EREAYRRENE MLKMVNNKFA DSKFEPPQPL RDMTNCNLPY KYELLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits